Gottfriedia acidiceleris: MY490_08950
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Entry
MY490_08950 CDS
T08082
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY490_08950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaj03019
]
MY490_08950
03400 DNA repair and recombination proteins [BR:
gaj03400
]
MY490_08950
Enzymes [BR:
gaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MY490_08950
Messenger RNA biogenesis [BR:
gaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MY490_08950
DNA repair and recombination proteins [BR:
gaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MY490_08950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
EIF_2_alpha
Motif
Other DBs
NCBI-ProteinID:
UPM55942
LinkDB
All DBs
Position
1849597..1851114
Genome browser
AA seq
505 aa
AA seq
DB search
MDLNKLLYEKFGYSSFRNNQKEIITDLLNSKDVLAMLPTGGGKSLLYQLTGLLLPGVVVI
VSPLLSLMEDQVEQIKAFGDKRVIALNSFRSFEQKKYLFNNISSFKFIFVSPEMLQNQFL
IQKLSTSRISLFVVDEAHCISQWGHDFRPEYKTLGEIKCKLNNPTVLALTATASKNVREE
IIETLQLKHVQKYINSVNRENIAIQVEKVDTEIEKIKSLTNHLSKLTGPGIVYCGTRAAC
EKISNTIREKLNCKVAYYHGGMEHEQRILIQQQFIQNQIDIIVCTSAFGMGINKPNVRFV
IHYQYPSNIENYLQEIGRAGRDGEPSIAILIVCEEDHELPLRLIDDEILSVNQVESFLTY
LKRLEENPIKLTETLVNNWKAVFQFSEIQWTTLHSEMVKFNVIVDENLHLEKINNDLIES
IKELISERKKVKYLKLKAMIDFLSSTTCYREKYLLLFDEILVQRPINCCNICGISIEEYC
SNDQEKYGNTNVLSWEQELRNKLGL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggacctaaataaacttctatacgaaaaatttggttattcaagttttcgaaataaccaa
aaagaaattattactgacttgttaaactcgaaggatgttttagcaatgctccctacaggt
gggggtaaatcattattatatcaattaacagggctacttttgccaggcgttgtagttatc
gtttctccattactttcccttatggaggatcaagtagagcagattaaagcatttggagat
aaacgagtaattgcactaaatagcttcagaagttttgagcaaaaaaaatatttatttaat
aatattagcagctttaagtttatttttgtttcgcctgaaatgttacaaaatcaattttta
attcaaaagctttctacttctagaatttcgttatttgttgttgatgaagcacattgtata
tctcagtgggggcatgattttagaccagaatataaaactctaggggaaataaagtgtaaa
ttaaataatccgacggttttagctttaaccgctacagctagcaaaaatgtgcgagaagaa
ataattgaaactttacagttaaaacatgttcaaaaatatatcaattcagttaatagagag
aacatagccattcaagttgaaaaagtagatacggaaatagaaaaaatcaagtctttaact
aaccatctttctaaattaacaggtccaggcatcgtctattgtggtacaagagctgcttgc
gagaaaatttcaaataccataagagaaaagttaaattgcaaagtcgcctattatcatggt
ggaatggaacatgaacaaagaattttaattcaacaacaatttatacaaaatcaaatagat
atcatagtttgtacaagtgcttttggtatggggataaataagccaaatgtaaggtttgta
attcattatcagtatccttcaaacatcgaaaattatcttcaagaaattggacgagctggc
cgagatggtgagccaagtatagcaatactaattgtatgtgaagaagatcatgagttacca
ctaaggttaattgatgacgaaatcctttctgtaaatcaagttgagtcttttctaacgtat
ttaaaaagattagaagaaaacccaatcaaattgactgaaacgctcgtgaataattggaaa
gcagtttttcaatttagtgaaatacagtggacaacgctacattctgaaatggttaaattt
aatgtaatcgtagatgaaaacttgcatttagaaaaaataaataatgacttaatagaatcg
attaaagagttaatttcggagcggaaaaaagtaaaatatttaaaactaaaagcgatgatc
gactttctatcttcaaccacttgttatcgcgaaaaatatcttttactttttgatgaaatt
ttagtacagagaccaataaattgctgtaacatttgtggtatatcgattgaagagtattgt
tcaaatgatcaagagaaatatggaaatactaacgtactttcatgggaacaagaattaaga
aataaattggggctgtga
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