Glycocaulis alkaliphilus: X907_0010
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Entry
X907_0010 CDS
T05786
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gak
Glycocaulis alkaliphilus
Pathway
gak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X907_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gak03019
]
X907_0010
03009 Ribosome biogenesis [BR:
gak03009
]
X907_0010
Enzymes [BR:
gak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X907_0010
Messenger RNA biogenesis [BR:
gak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X907_0010
Ribosome biogenesis [BR:
gak03009
]
Prokaryotic type
rRNA helicases
X907_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZU02561
UniProt:
A0A3T0E5B4
LinkDB
All DBs
Position
complement(9203..11251)
Genome browser
AA seq
682 aa
AA seq
DB search
MTLPDTIHPALRAALARKGYETLTDVQGAVLAEDAFGQDLLVSAQTGSGKTVAFGIAMAP
DLLGEDEKLPFSQSPLALVIAPTRELALQVQRELTWLYADAGARIASAVGGMDPRAERRA
MERGAHIIVGTPGRLKDHIERGALDLSAIRAIVLDEADEMLDFGFREDLEFILGSAPEER
RTLLFSATVSKEIARIAQTYQSDAVRISTISHGSQHADISYVVHAVPPRDRENAVINVLR
YHGAPRALVFCGTREGVNRMAARLANRGFASVALSGELSQAERTKALQSLRDGRAAVCVA
TDVAARGIDLPGLDLVIHADLPNNSETLLHRSGRTGRAGAKGISVLVTGFNQRGRATRLL
RDARLDAEWSDAPDAEAVRAKDRERLGEHPAFAGEIDEDRLSEAREIIERFGAERVALGF
LAELERRLPAPEELGVDSGPVRREERAPRDRNEPFERRERRERTPRAGFEGSVWFEVDMG
RRQRAEPRWLVPMICRLGDVTGRDIGAIDIGEVATRFEITGAQVEHFEKSLLEPRERDQN
VVVRRAGDTPLQPANPDAPPARQRPPRDDRPGRRERFARKTEREEDALYEDKPPAPSVNI
KPLGQGKKPDGAHKGPHKGGKSFKGDKPFRKDKPAGGEKPFHAGKPGKDGKPQAGKKPYK
GDGPSGGDQTLKRIKRKPRKDS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcctgacactatccatcccgcgctgcgcgcagcgctggcgcgcaagggctat
gagacccttaccgacgttcagggcgcggtgctggccgaggacgctttcgggcaggatttg
ctggtttccgcccagaccggctctggcaagacggtggccttcggcatcgcgatggcccct
gatcttctgggcgaggatgaaaaactgcccttctcgcaaagcccgctggctcttgtgatc
gcgccgacgcgcgagctggccctgcaggtccagcgcgagctcacctggctttatgctgat
gccggtgcgcgcattgcttctgcggttggcggcatggatcctcgtgccgagcgccgggcc
atggagcgcggcgcgcacatcattgtcggcacgccgggccgtctgaaggatcatatcgag
cggggcgcgctggatctctctgccattcgcgccatcgtgctcgatgaagccgacgagatg
ctcgatttcggcttccgcgaagaccttgaattcattctggggtcagcccctgaagaacgc
cgcacgctgctcttctcggctacggtgtcgaaagagatcgcgcgcatcgcccagacctat
cagtcagatgcggtgcgtatctccacgatcagccatggcagccagcacgccgatatcagc
tatgtcgtgcatgccgtgccgccgcgcgaccgggaaaacgctgtcatcaacgtgctgcgc
tatcatggcgcgccgcgcgctctggtgttctgcggcacgcgcgagggcgtgaaccgcatg
gcggcgcgcctggccaatcgcggctttgcctccgtcgccctctctggcgagctcagccag
gccgaacgtaccaaggcgctgcaatcgctgcgcgatggccgtgcggccgtgtgcgtggcg
accgatgtggccgcgcgcgggatcgatttgccgggcctggatctggttatccatgccgat
ctgcccaacaattcagagaccctgctgcaccgttcagggcgtacgggccgcgcgggcgcg
aagggtatcagcgtgctggtcaccgggttcaatcagcgcggccgggcgacgaggctttta
cgcgatgcgcgcctcgatgcggagtggtccgacgcgccggacgcggaggccgtgcgggca
aaagaccgcgagcgtcttggtgaacatcccgcctttgctggcgagatcgacgaagaccgg
ctcagtgaagcgcgcgagatcatcgagcgctttggcgctgaacgcgtcgcgctgggcttt
ctggccgagctggagcgccgcctgcccgcgcctgaagagctgggggtggatagcggcccg
gtccggcgcgaggagcgagctccgcgcgaccgcaatgagccgtttgagcggcgcgagcgc
cgtgaacgcacgccgcgcgccgggtttgagggcagtgtctggttcgaggtcgatatgggc
cggcgtcaacgcgccgagccgcgctggctggtgccgatgatctgccgtctgggcgatgtc
acgggccgcgatattggcgcgattgatattggcgaggtggccacccgctttgaaatcacc
ggcgcgcaggtcgagcatttcgaaaaatcacttctggagccgcgcgagcgtgaccagaac
gtggtggtccggcgcgcgggcgacacgcccttgcagcctgccaatccggatgcgccgccc
gcccgtcagcgcccgccgcgcgatgaccgtccgggccgccgggagcgctttgcccgcaag
acagagcgcgaggaagatgccctctatgaggacaagccgcccgcgccgagtgtgaatatc
aagccgctgggtcagggcaaaaagccggatggagcgcacaaggggccgcacaagggcggt
aaatccttcaagggcgacaagcctttccggaaggacaagccggcgggcggcgagaaaccg
ttccacgctggcaagcccggcaaggatggcaaaccgcaggccggtaaaaagccctataag
ggcgatggcccgtccggtggtgaccagaccctgaagcgcatcaagcgcaagccgcgcaag
gacagctag
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