Glycocaulis alkaliphilus: X907_0610
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Entry
X907_0610 CDS
T05786
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gak
Glycocaulis alkaliphilus
Pathway
gak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X907_0610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gak03400
]
X907_0610
Enzymes [BR:
gak01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
X907_0610
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
X907_0610
DNA repair and recombination proteins [BR:
gak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
X907_0610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AZU03156
UniProt:
A0A3T0E7H5
LinkDB
All DBs
Position
626703..627578
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AA seq
291 aa
AA seq
DB search
MPELPEVETVRRGLIPAMEGRRILSARTNRPDLRFAFPERMAERLTGTQVERLDRRAKYL
LVRLGSGETLLMHLGMSGRFSILAEDMARQPGDFVYAPPANPAHDHVVLDLEGGVRVTYN
DPRRFGFMTLFDTGEEAANPYLAQLGPEPDSNLFSGPHLAAALKGRRSPIKTALLDQRVV
AGLGNIYVCEALWRARISPKRQAYTIAGERAERLAVAVRNVIAEAIDAGGSTLRDYAGAD
GALGYFQHRFDAYGREGEACRGSSGNEGCGAPIIRLVQQGRSTFYCPACQR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggtggaaaccgtacgccgcggcctcatccccgccatggaaggg
cggcgcattctgtccgcgcggacgaaccggcccgatctgcgctttgccttccccgaacgc
atggcagagcgcctgaccggcacgcaggtggagcggctcgaccggcgcgcgaaatacctg
cttgtgcggctgggatcaggtgaaaccctgctcatgcatctgggcatgtcaggccggttc
tcgattctggcagaggacatggcgcgccagccgggcgatttcgtctacgcgccgcccgcc
aaccccgcccacgaccatgtcgtgctggacctcgagggcggggtgagggttacctataac
gatccgcgccgtttcggcttcatgaccctgttcgatacaggcgaggaggcggcaaatccc
tatctggcccagcttggaccggagccggattccaacctgttttccggtcctcatctggcg
gcagcgctcaaagggcggcgctcacccatcaagaccgcattgctggaccagcgcgtcgtg
gcggggctgggtaatatctatgtgtgcgaggcgctatggcgcgcgcgtatcagcccgaag
cgtcaggcctatacaatcgcgggtgagcgggcagagcgactggccgtggccgtgcgcaat
gtcattgccgaggcgattgatgcgggcggctctactttacgcgactatgcaggcgcagac
ggcgctctgggctatttccagcaccgctttgatgcctatgggcgcgagggcgaggcgtgc
cgcggcagctcgggcaatgaggggtgcggcgcgcccatcatccgcctcgtccagcaaggc
cggtcgaccttctactgcccggcatgccagcgctaa
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