Glycocaulis alkaliphilus: X907_2621
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Entry
X907_2621 CDS
T05786
Name
(GenBank) DNA helicase/exodeoxyribonuclease V A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
gak
Glycocaulis alkaliphilus
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gak03400
]
X907_2621
Enzymes [BR:
gak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X907_2621
DNA repair and recombination proteins [BR:
gak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
X907_2621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
Viral_helicase1
AAA_30
AAA_12
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AZU05132
UniProt:
A0A3T0ECV0
LinkDB
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Position
complement(2722303..2725992)
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AA seq
1229 aa
AA seq
DB search
MSAPGFDPAVAASATTAQRAAADPRASVFVEANAGSGKTRVLVDRVARLLLEGVPPDRIL
CVTFTKAAAGEMQTRLFLKLGDWSVMADEKLRAELQKLTGEEAEPDAGRLAEARKLFARA
LETPGGLKVQTLHAFCDSLLRQFPLEAGLPPGFATQEDAQSARVRREAELRVYETARRDR
GGALAMAIEAITVRAGPTGFEEIFKKAAHQRHRLSELFERAQGEGPLIAEAARMLGIDPD
ADEVRLKAGFIGGLDLDAVQRCADAIAASTAKHAEADADKLYAPLRLARAGEVDRAFDAY
CGFMLTGTGTLRASLFVKSAGEACPELIGLFGPEGSERARMETVLRQLTAARLHALTSAS
LTLARAFIAEYQRLLTRERAVDFADLVVRASRLLGTAEMAAWVRYKLDGGLEHILVDEAQ
DTAPEQWDVIDALSAEFFAGEGRERTGALARTVFCVGDEKQSIYSFQNADPARFIAQGTK
LAGLAEGAQLAFVKPELKTSFRSAPEVLEAVDMAFADIREGLETKFLSGAPETKLQDDRE
QTVEAAPAAGNHPFMAYRGHEAARRGTPGCVEIWPVTPRLPKGEDDSLDDEPDGPVDKAR
YNSPRNQLAEAVAQEIASIIERGDAVWEEKPDWHQRAATPGDIVILVRKRGGLFMEIIRQ
LKIRNVAVAGADRMVLPDQLVVQDMLSLARFALQPGDDLALAEVLKGPAFHPVGAEAPPI
DDDVLFRLAHKRKGSLWEALQRSDDPALSDAKTALKAVRGRVDTLTPYAFFARFLSEACD
TGESRAARVYARLREEARDPLEEFLSRALAHEREGAPSLALFIDAITRSDSELKRDPEGG
RNEVRVMTVHAAKGLEAPIVFLPDTTSPAFGRHPLIEDHEESGLLWSENDSFAPDIITAL
REAWKKDQENESARLLYVAMTRARDRLIVCGHAHGNAKEPKPESWYGRLAAAWQGEGWRS
AETAIDAIAAHYEWENPEQARRYGVDVHPALKKADEKDRRVADPIWLRTPAAPETIAARA
IAPSRLLAGLEAGGEPAGLSPLAAGGRDRFVRGTLIHKLLQTLPDLPPAGRADAAARLLA
RHQELDEAERAAIAREALAVLADPQFAPLFGPGSRAEVSLSGTAPGLPPGVRVNGQVDRL
LVTPDRVLVVDFKTNRPPPDKVDDVASAYLAQMAAYRALLRVLYPGRAVRCALVWTDAGR
LMELPDAAMDAALELAAQPGALDRGGAAS
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgcccggctttgatcctgccgtcgcggcttccgccaccaccgcgcagcgtgcg
gcggccgatccgcgcgccagcgtgttcgtggaagccaatgcgggctctggcaagacgcgc
gtgctggtcgaccgggtggcgcgcctgctgctggaaggcgtgccgccggaccgcatcttg
tgcgtgaccttcaccaaggcggcggcgggcgagatgcagacccggctcttcctcaagctg
ggcgattggtctgtcatggccgacgaaaagcttcgcgccgaactgcaaaagctgaccggc
gaggaggctgagccggacgcggggcgtcttgccgaggcgagaaagctgtttgcgcgcgcg
ttggaaacgccgggcggtctgaaagtgcagaccttgcatgcgttctgcgactcgctgctg
cgccagtttccgctggaggccgggctgccgccgggctttgccacacaggaagacgcccag
agcgcgcgggtgcgccgcgaagcagaactgcgcgtctatgagaccgcccggcgcgaccgg
ggaggcgcgcttgccatggccatcgaggccatcaccgtgcgcgccggacccactggcttt
gaggagatattcaaaaaggccgcacaccagcgccatcgcctgtcggagctgtttgaacgg
gcgcagggcgaaggcccgctgatcgccgaggctgcacgcatgctgggcattgatccggat
gcggatgaagtgcgcctcaaggccggtttcattggagggctggatctggatgccgtgcaa
agatgcgctgatgcgatagcggcatccacggccaaacatgccgaagcggacgcggacaaa
ctctacgcgcccttgcgtcttgcgcgggcgggggaggtggaccgcgccttcgatgcctat
tgcggtttcatgctgacgggaaccggcacgttgcgcgcctcgctctttgtgaagagtgcg
ggcgaggcctgcccggagctgattggtcttttcggtccggagggcagcgaacgggcgcgc
atggagacggtgctgcgccaactgacggctgcacgcctgcacgctctgacatcggcaagc
ctcaccctcgcgcgggcctttatagctgagtatcagcgcttgctgacgcgcgaacgcgcg
gtggattttgccgatctggtggtgcgggcctcgcggctgcttggcaccgccgagatggcg
gcctgggtacgctacaagctcgatggcgggctggagcatatccttgtggacgaggcgcag
gacaccgcgccggaacaatgggatgtcatcgatgctctgtcggcggagttttttgccgga
gagggccgggaacggacgggtgcgctggcccgcaccgtgttctgcgtgggcgatgagaag
cagtccatctattccttccagaacgctgatccggcccgcttcatcgcgcaaggcaccaag
cttgccggtctagccgaaggcgcgcagctggcgtttgtgaagccggaactgaaaacctcc
ttccgctccgcgccggaagtgctggaagcggtcgatatggcctttgccgatattcgcgaa
ggtctggaaaccaaattcctgtccggcgcgccggaaaccaagctgcaggatgaccgcgaa
cagacggtggaggccgcgccagctgccggcaaccaccctttcatggcttatcgcgggcac
gaggcggcacggcgcggcacgccgggctgcgtggagatatggccggtcacgcccagactg
cccaagggcgaggatgacagcctggacgacgaaccggacggcccggtcgacaaggcccgt
tacaactccccgcgcaaccagctcgctgaagccgtggcgcaggagatcgccagcattatc
gagcgtggtgatgcggtgtgggaggagaagccggactggcaccagcgggcggcaacgccg
ggcgatatcgtcatactggtgcgcaagcgcggcgggctgttcatggagatcatccgtcag
ctgaaaatccggaatgtggcggtggcgggcgcggaccgtatggtcctgcccgatcagctc
gtcgtgcaggacatgctctcactggcccgcttcgccctgcagccgggcgatgacctggcg
ctggccgaagtgctcaaaggcccggccttccatccggtaggcgcagaggcgccgccgatt
gacgacgatgtgctgttccgcctcgcccataagcgaaaaggctcgctctgggaggcgctc
cagcgcagcgatgaccctgcgctcagtgacgcgaaaacggcgttaaaggctgtgcgcggg
cgcgtcgatacgctgaccccttatgccttcttcgcgcgcttcctgagcgaggcctgcgat
accggcgaaagccgcgcagcgcgcgtttatgcccgcctgcgcgaggaggcgcgcgatccg
ctggaggagttcctctcccgcgcgcttgcccatgagcgcgaaggcgcgccttcgcttgcc
ctcttcatcgatgccattacccgctccgatagcgagctgaagcgtgaccccgaaggcgga
cgtaacgaggtgcgcgtgatgaccgtgcatgccgccaaggggctggaagcgcccatcgtc
ttcctgcccgatacgaccagcccggcttttggccgtcatccgctgatcgaggatcacgag
gaaagcggtttgctctggtctgagaatgacagctttgcgcctgacatcatcaccgcgcta
cgcgaggcctggaagaaggatcaggagaacgaatccgcccgcctgctctatgtggcgatg
acgcgcgcgcgtgaccgtctgatcgtctgtggccatgcccatggaaacgccaaagagcca
aagccggagagctggtacggccgtctcgccgccgcctggcagggcgaaggctggcgcagc
gcagagacggcgattgacgccattgcggcccattatgaatgggaaaatcccgagcaggcc
cggcgctatggcgtggacgtccacccggccctgaagaaggcggacgagaaggacaggcgt
gtcgccgatcccatctggctgcgcacgccagccgcgccggaaaccattgccgcgcgcgcc
attgccccctcacgccttctggccgggctggaggccgggggagagcctgctggcctttct
ccacttgcagcaggcggacgggaccgcttcgtgcgcggcacactcattcacaagcttttg
cagaccttgcctgatctgccacccgccgggcgcgccgatgcagcggcccgcctgctggca
cgtcatcaggagctggatgaggcggagcgcgccgcgattgcacgcgaagcgctggcggtt
ctggcggacccccagtttgcccccctgttcggtcctggctcgcgcgccgaggtgtcgctg
agtggcactgcgccgggcctgccgccgggtgtgcgcgtcaacggccaggtggaccggctg
ctggtcacgccggaccgtgtccttgtcgtcgatttcaagaccaaccgcccgccgcccgac
aaggtagacgatgtggcatcggcgtatctggcgcagatggcagcctaccgggcattgttg
cgcgtgctctacccgggccgggccgtgcgctgcgcgctggtctggacggacgcaggccgg
cttatggagctgcccgatgcagccatggacgcggcgctggagctggccgcgcagcccggc
gcgcttgaccgtgggggagcggcttcctag
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