Glycocaulis alkaliphilus: X907_2853
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Entry
X907_2853 CDS
T05786
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gak
Glycocaulis alkaliphilus
Pathway
gak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X907_2853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gak03019
]
X907_2853
03016 Transfer RNA biogenesis [BR:
gak03016
]
X907_2853
Enzymes [BR:
gak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
X907_2853
Messenger RNA biogenesis [BR:
gak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X907_2853
Transfer RNA biogenesis [BR:
gak03016
]
Prokaryotic type
tRNA degradation factors
X907_2853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AZU05361
UniProt:
A0A3T0EDI8
LinkDB
All DBs
Position
complement(2959731..2961860)
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AA seq
709 aa
AA seq
DB search
MFNIQKETIDWAGRQLTIETGRMARQATGSVLVTYGETSVLATAVAMKQVKDGIDFFPLT
VNYQEKYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMLTVLSH
DMENDPDIVAMVGASAALVLSGLPFLGPIGAARVGYKDGGYVINPTIDEMKESDLDLVVA
GTGDAVMMVESEAKELTEEVMLGAVMAGHEAFQPVIDMIIRLAEKAAKEPWDFVPEDHSA
LEAKVQKLVGKDIAKAYTIKDKTERYAALGAAKEKAVAELALSEANPDGVDPAVLKGVLK
DVEASVVRGGIIKTGKRIDGRKLDDVRAIVSEAGILPRTHGSALFTRGETQALCVATLGT
GEDEQMIDDLTGMYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAMRAVLPSA
EDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPIKRPVSGIAMGLIKDPEGIAVL
SDILGDEDHLGDMDFKVAGTEVGITSLQMDIKIAGITKEIMETALSQAHAGRAHILAEMN
KALTGARGELADTAPRIEQMKIPVDKIRDVIGTGGKVIREIVEKTGAKVNVEDDGTIKIA
SSDAASIKAARDWIHSLTAEPEQGAVYQGKVVKVMDFGAFVNFFGARDGLVHVSQLKAER
VNHPNDVVKEGDLVWVKLMGFDDRGKVKLSMKVVNQETGEEIAAEGEAD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatattcaaaaagagacgatcgactgggctggacgccagctcaccattgaaacc
ggccgtatggcccgccaggcaaccggatcggttctggtcacttacggcgagacaagtgtg
ctcgcgaccgccgtggcgatgaaacaggtcaaggacgggatcgacttcttcccgctgacc
gtgaactaccaggaaaaatacttcgcagccgggaaaatccccggtggcttcttcaagcgc
gaaggccgcccgaccgacaaggagacgctgacctcgcgcctcatcgaccggccgatccgc
ccgctcttccccaaaggcttcaagaacgacacgcaggtcatgctgaccgtcctgtcgcac
gacatggaaaacgatcccgatatcgtggccatggtcggcgcgtcggcggcgctggtgctg
tccggcctgcctttccttggccccatcggcgctgcgcgcgtgggttacaaggatggcggc
tatgtcatcaacccgaccattgacgagatgaaagagtccgatctcgatctggttgtcgcc
ggtacgggcgacgccgtgatgatggtcgagtccgaagcgaaagaactgaccgaagaggtc
atgctcggcgcggtgatggccggccacgaggctttccagcccgtgatcgacatgatcatc
cgcctggctgaaaaagccgccaaggagccgtgggacttcgtgccggaagaccattccgcg
ctggaagccaaggtccagaagctcgtcggcaaggacatcgccaaggcctacaccatcaag
gacaagaccgagcgctatgctgcgcttggcgccgcgaaggaaaaggccgttgctgagctc
gccctgtcggaagccaatccggacggtgttgatccggcggtgctcaaaggcgtgctcaaa
gacgtggaagcgtctgttgtgcgtggcggcatcatcaagaccggcaagcgcattgatggc
cgcaagctggatgatgtgcgcgccatcgtgtcggaagcgggcatactgccgcgcacgcac
gggtcggccctcttcacccgcggtgaaacgcaggcgctgtgcgttgccacgctcggcacc
ggtgaagacgagcagatgatcgacgatctgacggggatgtataaggagcgcttcatgctc
cactataacttcccgccctattcggtcggtgaaacctcgttccgcctggctccgggccgc
cgcgaaatcggccacggcaagctggcctggcgggccatgcgcgcggttctgccgagcgcg
gaagacttcccctacacgatccgtctggtctcggagatcaccgagtccaatggttcgtcc
tcgatggcgacggtgtgtggttcatccctcgcgctgatggatgccggtgtgccgatcaag
cgtccggtttcgggtatcgccatgggccttatcaaggacccggaaggcatcgccgttctc
tccgatattctcggtgatgaggatcatctcggcgacatggacttcaaggtggccggtacc
gaagttggcatcacctcgctgcagatggacatcaagatcgccggcatcaccaaggagatc
atggaaaccgcccttagtcaggctcatgccgggcgcgcccatatccttgccgagatgaac
aaggcgcttaccggtgcccgcggcgagctggccgacaccgcgccgcgcatcgagcagatg
aaaatcccggtcgacaagatccgggacgtcatcggcacaggcggcaaggtgatccgcgag
atcgtggagaagaccggcgccaaggtgaatgtggaagacgatggcacgatcaagatcgcc
tcgtctgatgccgcatcgatcaaggcggcccgtgactggatccactccctgacggccgag
ccggagcagggcgcggtctatcagggcaaggtggtcaaggtcatggactttggcgccttt
gtgaacttcttcggcgcgcgtgacggcctcgttcacgtctcgcaactgaaagccgagcgc
gtcaatcacccgaacgacgtcgtcaaggaaggcgaccttgtatgggtgaagctgatgggc
tttgacgaccggggtaaggtgaaactttccatgaaggtcgtgaaccaggaaaccggcgag
gaaatcgccgctgagggcgaggccgactaa
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