Gordonia amarae: GII34_00025
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Entry
GII34_00025 CDS
T07320
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
gam
Gordonia amarae
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gam03032
]
GII34_00025 (gyrB)
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_00025 (gyrB)
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
GII34_00025 (gyrB)
DNA replication proteins [BR:
gam03032
]
Prokaryotic type
DNA Topoisomerases
GII34_00025 (gyrB)
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GII34_00025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
DUF2963
Motif
Other DBs
NCBI-ProteinID:
QHN20149
LinkDB
All DBs
Position
5679..7754
Genome browser
AA seq
691 aa
AA seq
DB search
MAETNDASSNNRKPNKKPGEYGADSINILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVD
NSVDEAMAGYASRVDVTLLADGGVEVIDDGRGIPVATHATGVPTVEVVMTQLHAGGKFDS
DSYAVSGGLHGVGISVVNALSTKVELEIKRDGFQWSQTYLNSEPQTLHQGAASRKTGTTT
RFWPDPAIFTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDTPG
GTELAEVVQSPAQKATAKSKTRTYHYADGLIDYIKHINKRSKNPIHQSVIGFSGKGTGHE
VEIAMQWNDGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTKLT
GDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAKNI
IKKAVDSAQARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAGGS
AKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK
IVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVYLAQPPLYKLKWQGKNAEPEFAYSD
RERDGLLEAGRAAGKKINSDDGIQRYKGLGEMNAKELWETTMDPAVRVLRQVTLDDAAAA
DELFSILMGEDVAARRSFIARNAKDVRFLDV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtggccgagaccaacgacgcatccagtaacaaccgcaagccgaacaagaagccgggggag
tacggcgcggactccatcaacattctcgaggggctcgaggctgtccgcaaacggccgggc
atgtacatcggttccaccggtgaacgcggcctgcaccacctgatctgggaggtcgtcgac
aactcggtcgacgaggcgatggccggttacgccagccgcgtcgacgtcaccctcctcgcc
gacggcggcgtcgaggtcatcgacgacggtcgcggcatccccgtcgccacccacgccacc
ggtgtgcccaccgtcgaggtcgtcatgacccagctgcacgccggcggcaagttcgactcc
gactcgtacgcggtgtccggcggtctgcacggcgtcggcatctccgtggtcaacgccctg
tccaccaaggtggagctggagatcaagcgcgacggtttccagtggagccagacctacctc
aactccgaaccgcaaaccctgcatcagggtgccgcgtcccgtaagacgggcaccaccacg
cgattctggccggacccggcgatcttcaccgaaaccaccaggttcaacgccgaaaccgtc
gctcggcggctacaggagatggccttcctcaacaagggtctgaccatcaccctcaccgac
aaccggccgcaggccgtcgaggcaccgggcgaccccaacggggacggggacacacccggt
ggcactgaactcgccgaggttgtgcagtcgccggcgcagaaggccacggccaagtccaag
acccgcacctatcactacgccgacggcctgatcgactacatcaagcacatcaacaagcgg
tccaagaatcccatccaccaatcggtgatcgggttcagcggcaagggaaccggccacgag
gtcgagatcgccatgcagtggaacgacggctactccgagtcgattcacaccttcgccaac
accatcaacacccacgagggtggtactcacgaagagggtttccgcgccgctctgacctcg
acggtcaacaagtacgccgcagacaagaagctgatcaaggagaaggacaccaaactcacc
ggcgacgacatccgcgaagggctcgcggcggtgatctcggtgaaggtgtccgatccgcag
ttcgaggggcagaccaagaccaaactcggcaacaccgaggtcaagggctttgtgcagaag
atctgtaacgagcatctggcgcactggttcgagtccaaccctgccgaagccaagaacatc
atcaagaaggccgtcgattcggcacaggcccgtgccgcggcccgccgcgcccgagatatg
gtgcgccgcaagacagccaccgacatcggcggtctgcccggcaagctggccgactgccgc
agcaacgatccggcgctgtgcgaggtgtacatcgtggagggtgactcggccggcggcagc
gccaagtcgggccgtgactcgatgtaccaggcgatcctgccgatccgcggcaagatcatc
aacgtcgagaaggcccgcatcgaccgggtgttgaagaacaccgaggtccagtcgatcatc
accgcgttcggcaccggcatccacgacgagttcgacatcgccaagctgcgctaccacaag
atcgtgctgatggccgacgccgatgtcgacggccagcacatctccaccctgctgctcacg
ctgctgttccggttcatgcgcccgctcatcgagcacggccacgtgtacctggcgcagccg
ccgctgtacaagctcaagtggcagggcaagaacgccgaacccgagttcgcttactccgat
cgtgaacgcgacggcctgctcgaggctggccgggccgcgggcaagaagatcaactctgac
gacggcatccagcgctacaagggcctcggcgagatgaacgccaaggaactgtgggagacc
accatggacccggcggtccgggtgctgcgccaagtgaccctcgatgacgccgccgcggcc
gacgaactgttctccatcctgatgggtgaggacgtcgccgcccgccgcagcttcatcgcc
cgcaacgcgaaagacgttcgcttcctggacgtgtga
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