Gordonia amarae: GII34_01120
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Entry
GII34_01120 CDS
T07320
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
gam
Gordonia amarae
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_01120
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GII34_01120
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GII34_01120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QHN20339
LinkDB
All DBs
Position
complement(265005..267860)
Genome browser
AA seq
951 aa
AA seq
DB search
MMFDEVVGAVAGAKAGDPLAPVTVVVPTHAAGREVLHALARAGAVANTSIVTFRQVVERL
AGPVLKPRQALPYPVLEAAVALVLQERPGVFEEVAGAPITTQALAQAAWQLTELADPRID
ASTPLVGDMLRVYREALTEDLTGQYFLKHEAYAAAEAAARTLDNVVVFAPIRTNPALDPL
LDVLAANGTVIEPGSDPLPTQVIHTSDADDEVRAVVRLVRKHLAAGVPGHRIGIYYPTPD
PYLGLLHEHLTAGRIVFNAPLHRGLGDRPAARALLGLLQIDVAAMPRRDILGFLAEGVLR
RPQVPGAEKPVSQRKLELVTRDLRKIVGGADWHSLTEPPPGKTPEEDRYSDEAIALHDFV
EALQADLTALGEAGTWPEVSAQLIALLDSRFAGSSEQASADLVTLRQDCAALAFLKEYAP
APTPERILDAVMVRIDSRGGKHGTSGVGVTVGRLADAAGRDLDVVVVLGAAEGVLPVPRR
DDPLLPAELTGRTPADSMDAQLRSYQAALATVGSERVVTFPRGSLRGGAERVPSRWLLPA
LSSLAGTPVDVVGWQKQTLGADSIVVVESFDVAAQHANPRIGASSASETEWRLRALAAVP
ADRRQDALTDPVVVDGMRMRSDRLHGRFTRFNGNVHTVCDLLTVFDNPVSPTRLEDWVKS
PYRFFLTTVLGASELPDPDEAVEIDALTRGNLIHEILELYVVGTTEGAAHDLSRLIGIAE
DVLTRAERDNPGWLGHLWARARGTIMRDLRTWHGYDTDDHAHGWTPTDAERTFGMPPRGR
PYSDPPEHPAVEFDLGTATIRFRGAVDRIDKHRDGRVRVTDYKSGQKKTYDKITDQQPTE
NGKRFQLPVYALLAREFGDAVAARYWFITDKGGFAEVGYTLTQDVIDVLTGDLRLVHEMI
CAGYFPPRTPDTWWADPILDLVGKAGLERAWANLEEVPEITDYVAKYGAAQ
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcgatgaggtggtgggggcggttgccggggccaaggcgggggatccgctggct
ccggtgacggtggtggtgcccacccatgcggcggggcgggaagtgttgcatgcactagcc
cgggcgggggcggtggccaataccagcatcgtgacgtttcggcaggtggtggagcggctg
gcggggccggtgctcaagcctcggcaggcgttgccgtatccggtgctggaggcggcggtg
gcgctggtgctccaggagcggcccggggtgttcgaggaggtggcgggggcgccgatcacg
acgcaggcgctggcgcaggcggcgtggcagttgaccgagctggccgatccgcggatcgat
gcttcgacaccactcgtcggcgacatgttgcgggtgtaccgggaagcgctcaccgaggac
ctgaccggacagtacttcctgaaacatgaggcgtatgcggcggccgaggccgcggcacgg
acactggacaacgtggtggtgttcgcgccgatccgcaccaatccggcgctcgacccgctg
ctcgacgtgctcgccgccaatggcaccgtcatcgaacccggcagcgacccgctacccacc
caggtcatccacacctccgacgccgacgacgaggtgcgggcggtggtgcgactggtccgt
aagcatctggcggccggggttccggggcaccgtatcggtatctactaccccacccccgac
ccgtatctggggttgctgcacgaacatctgaccgccggccggatcgtgttcaacgcaccc
ctgcatcgcggcctcggcgaccggcccgccgcccgcgcccttctcgggctgctccagatc
gatgtcgcggcgatgccgcggcgagatatcctcggcttcctcgccgaaggggtgctgcgg
cgtccgcaggttccgggagccgaaaagccggtcagccaacggaagctcgaactcgtcacc
cgcgacctccgcaagatcgtcggcggtgcggactggcacagtctcaccgaaccacctccc
gggaagactccggaggaggacaggtattccgacgaggccatcgccctgcacgactttgtc
gaagcactgcaagccgacctgaccgcactcggcgaggccggcacctggcccgaggtgtcc
gcacagttgatcgcactgctcgacagcaggttcgccgggtcgtcggagcaggcgtcggcc
gatctggtgaccttgcgacaggactgtgccgcactcgctttcctcaaagagtacgcaccg
gcaccgacccccgaacgcatactcgacgccgtcatggtccgcatcgactcacgcggcggc
aaacacggaacctccggcgtcggggtcaccgtcggcaggctcgccgacgcggcggggcgc
gacctcgacgtcgtggtcgtcctcggtgcggcggaaggcgttctgccggtgccgcgccgc
gacgatcccctgctgccggccgaactcaccggccgcacccccgccgacagcatggacgcc
cagttgcgcagctatcaggcggcgctcgcgactgtcggctccgagcgggtcgtcaccttt
ccgcgcggcagcctgcgcggcggggccgaacgggtgcccagccgatggctgctgcccgcg
ctcagctcgctcgccggcacacctgtcgacgtcgtcgggtggcagaaacaaactctcggc
gccgacagcatcgtggtcgtcgaatcctttgatgtggcagcgcaacacgccaatccgcgg
atcggggcgtcgtcggcgtcggaaaccgaatggcggctgcgagcgctggccgcggtgccc
gccgatcggcggcaggacgcgctcaccgatccggtggtcgtcgacgggatgcggatgcgc
agcgacaggctgcacggccggttcacccgcttcaacggtaacgtgcacaccgtttgcgat
ctgctcaccgtattcgataatccggtgtcgcccaccagacttgaggactgggtgaaaagc
ccgtaccgcttctttctcaccaccgtgctcggcgcgagcgaactccccgaccccgacgag
gccgtcgagatcgacgcactcacccgcggcaacctcatccacgagatcctcgaactgtac
gtcgtcggcaccactgagggtgcggcacacgacctttcccgcctcatcggtatcgccgag
gacgtgctgacccgggccgagcgggacaatccgggctggctcggccacctgtgggcgcgg
gcgcgcggcaccatcatgcgggacctgcgcacctggcacggttacgacaccgacgaccac
gcccacggctggacccccaccgacgccgaacggaccttcgggatgcctccccggggccgc
ccctacagcgacccgcccgagcacccggccgtcgagttcgatctcgggaccgccaccatc
cgcttccggggcgccgtcgaccgtatcgacaagcaccgcgacggccgggtccgtgtcacc
gactacaagtcggggcagaagaagacgtacgacaagatcaccgaccagcagcccaccgag
aacggcaaacgcttccagctccccgtatacgccctgctggcgagggaattcggagacgcg
gtggcagcccgctactggttcatcaccgacaagggcggattcgccgaggtggggtacaca
ctcacccaggacgtcatcgatgtgctcaccggagatctgcggctggtgcacgagatgatc
tgcgccggctactttccgccccgcacccccgacacctggtgggccgacccgatcctcgac
ctcgtcggcaaggccggtctcgaacgcgcctgggccaacctcgaagaggtacccgagatc
accgactacgtcgcgaaatacggagccgcacaataa
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