Gordonia amarae: GII34_01600
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Entry
GII34_01600 CDS
T07320
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gam
Gordonia amarae
Pathway
gam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GII34_01600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_01600
Enzymes [BR:
gam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GII34_01600
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GII34_01600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
RNase_H2_suC
Motif
Other DBs
NCBI-ProteinID:
QHN20423
LinkDB
All DBs
Position
complement(383770..386256)
Genome browser
AA seq
828 aa
AA seq
DB search
MAGDTLDIDGRTIAVTNLAKVLYPLVPPDVAGTRKFEVIDYYNRIADVLLPHVRGRIITR
KRWPGGVGSAAFFEKHLPEGAPAWLPRYTVEHSQRSITYAMADDRAALVWLAQMAALELH
VPQWRVPVADEPITATRLVLDLDPGPGVPLHECAQVALLIRQMLDAAGLRSFPVTSGGKG
IHVYARLDRPVSPDSARTVAKQIATGLAAAYPDTITASMAKNVREHRVFIDWSQNSGSKT
TLAPYSLRGRERPWVAAPRTWSELSEPDLRQLLYTEVLDRVEESGDLLAGLDEPLPSHGV
SRLVADAPHTSTGEGDAGKGEIGERGTGEVNSSPTSVDDNTPPPPVEVRGTSLETSQAEN
VADLSEYRSKRDETKTPEPFGDDTHRRTAREGPIFVIQEHHARRLHYDFRLEHDGVLVSW
AVPKNLPTDHDQNRLAVQTEDHPLDYAEFSGDIPAGEYGGGHVEIWDSGTYELEKWRDKE
IIVRLRGRKLQGRYVLIKTGEKNWLAHLMHDEPRPIKADLRDPRPMLAVDEPIDGLDARD
WAFEGKWDGYRVLVRSVGGEFRLSSRSGLDMTADFPELRGIVDELGLLDVVLDGEVVAID
SSGRTNFTILASRSTTAEPYRLRLLLFDVLYLNGKQLLDVPWSQRRQLLEELAPLFRSSP
YTEVPALLDGSGADAVAHSREHNYEGVVAKLRTSVYQQGRRSTQWRKHKNWNDIEVVIGG
WRPGRGNRADTIGSLLLGLPEETGLRYVGRVGTGFTDAQLRVLADELKPLEIRMCPFIDS
IDRPVASTATWVLPKLVGEVRFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgacaccctcgatatcgacggccgcacaatcgctgtcaccaacctggccaag
gtgctgtatccgctggtcccgcccgacgtcgccggaacccgcaagttcgaggtcatcgac
tactacaaccgcatcgccgacgtgctgctgccgcatgtgcggggccgcatcatcacccgc
aaacgctggcccggcggggtcgggtcggccgcgttcttcgaaaagcatctgccggagggc
gcgccggcgtggctgccgcggtacaccgtcgaacacagtcagcggtccatcacctacgcg
atggccgacgaccgcgcggcgctggtgtggctggcgcagatggcggcgctcgaactgcac
gtcccccagtggcgggtccccgtcgccgatgagccgatcacggcgacccggctggtcctc
gacctcgatcccggcccgggggtgccgctgcacgaatgcgcgcaggtcgcgctgctgatc
cggcagatgctcgacgccgcgggtctgcggtcgtttccggtgaccagcggcggcaagggc
atccacgtgtacgcccgtctcgaccgtccggtgtcgccggattcggcgcgcacggtggcc
aaacagatcgcgaccggtctggcggcggcctatcccgacaccatcacggcgtcgatggcg
aagaatgtgcgcgagcaccgggtgttcatcgactggagccagaacagcggatccaagacg
acgctcgcgccgtactcgttgcgcggccgggagcggccgtgggtggcggcaccgcgtacc
tggtccgagttgtcggagccggacctgcggcagttgctgtacaccgaggtgctggaccgg
gtcgaggagtccggggatctgctggcgggactggacgagccgttgccgtctcacggggtt
tcgaggctcgtcgctgacgctcctcacacctcaaccggcgaaggggacgccgggaaaggg
gaaattggcgaacggggtaccggcgaagtgaacagctcaccgacgtcggtcgacgacaac
accccacccccgccggttgaggtgcgaggaacgagcctcgaaacctcgcaggccgagaat
gtcgccgatctgtcggagtaccggagcaaacgcgacgagacgaagacacccgagcccttc
ggtgacgacacccaccggcggaccgcgcgcgagggaccgatcttcgtgatccaggaacat
cacgcccggcggctgcactacgacttccggctcgaacacgacggggtgctggtgtcgtgg
gcggtgccgaagaatctgccgaccgatcacgaccagaaccggctggccgtgcagaccgag
gaccatccgctcgactacgccgagttctccggcgacatcccggcaggcgaatacggcggc
gggcatgtggagatctgggacagcggcacctacgagctggagaagtggcgggacaaggag
atcatcgtccgactgcgcggacgcaaactccagggccggtacgtgctgatcaagaccggt
gagaagaactggctcgcccatctgatgcacgacgaaccgcgccccatcaaggccgacctg
cgtgatccgcggccgatgctggccgtcgacgaaccaatcgacggactcgacgcccgcgac
tgggcgttcgagggcaaatgggacgggtaccgggtgctggtgcggtcggtgggcggcgag
ttccggctgtcgtcgcggtcgggtctggacatgaccgccgacttcccggagttgcgcggc
atcgtcgacgaactcgggctgctcgatgtggtgctcgacggtgaggtggtggcgatcgac
tcgtcgggccgcaccaatttcacgatcctcgcctcgcggagcacgaccgccgaaccgtac
cggctgcggttgctgctgttcgacgtcctgtatctgaacggcaagcaactgctcgacgtg
ccctggtcccagcgccggcagttgctggaggaactggcgccgctgttccggtcgtcgccg
tatacggaggtgccggcgctgctggacgggtccggtgccgacgccgtcgcgcacagccgc
gaacacaactacgaaggtgtggtcgccaagctgcgtacctccgtctaccagcagggacgc
cggtcgacgcaatggcgcaaacacaagaactggaacgacatcgaggtggtgatcggcggc
tggcgcccgggccggggcaaccgcgccgacaccatcgggtcgctgctgctcgggctgccg
gaggagacgggcctgcgatacgtcggccgcgtcgggacgggtttcaccgacgcccagctg
cgggtcctcgccgacgagctgaaacccctggagatccggatgtgcccgttcatcgactcg
atcgaccggcccgtcgcgtcgacggcgacgtgggtgctgccgaagctggtcggcgaggtg
cggttcatggactggacgtcgacggggcatctgcggcatccgagctggcgtggcatccgg
cgcgacaaactgcccggcgatctgtag
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