Gordonia amarae: GII34_06825
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Entry
GII34_06825 CDS
T07320
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gam
Gordonia amarae
Pathway
gam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GII34_06825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_06825 (mfd)
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GII34_06825 (mfd)
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GII34_06825 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHN21294
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All DBs
Position
1501877..1505443
Genome browser
AA seq
1188 aa
AA seq
DB search
MSTPALHGLAALTCSDKAFAGLVQRHAQPELDITAPDAARPFVVAALADHDRSPLLVVSA
NGREADDLTAELAELLGDPRAVVQFPSWETLPHERLSPSADTVGRRLAVLHRLAHPEGDP
LRVVVTTVRSLVQPMAPGLGEARSIDLAEGIEIDFDGLLAQLVEMAYERVDMVGGRGEFA
VRGGILDVFPTTADYPVRVEFWGDEISEIRAFSVADQRSQPEIDASTVRIHPCRELVLST
QVRARAAELAGEAGDDQMLSEMLTKLSEGIPVAGMEALIPALVDGEMQLLTQVVPDGTRV
LILDPEKVRTRAAGLAETGAEFLEASWQAAAVGADAPIDTRGTAIDLEASAYRSLEAVRR
ATLRAGKPWWTISPLSSGTGDEVELELTAGPAPHGEEPEIKKTFAMLRAHVTGGGTAAIV
VAGKGTAQRVCERLADAEVPSGLADPGATPEPGRVSVFHGTLRNGLVCPGARLVIVTETD
LTGTRVASVRDGRKLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGARREYL
VIEYAAGKRGQPGDRLFVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAVREIA
GELVQLYAARHAAPGFAFSPDTPWQREMEDAFDFTETVDQMTVIAEVKSDMERPVPMDRV
IVGDVGYGKTEIAVRAAFKAVQDGKQAAVLVPTTILAQQHLQTFSERMTGFPVRVKGLSR
FTDAKESKQIIDEMATGEVDIVVGTHRLLQTGIVWKDLGLVIVDEEQRFGVEHKEHIKSL
RTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYAAKQVAAAIRRE
LLRDGQVFYVHNRVSTIDKTAKEIATMVPEAKVVVAHGQMNEDQLEKTVAGFWNREFDVL
VCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSAEKPLTET
AYDRLSTIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGQTVQTEETAEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLAAATDDDVVAGILA
ELTDRYGEPPAETKRLALIARLRLRCRERGVTELGVVGTSVKIAPLNLLDSEQVRLKRIY
SSATYRATTSVITLPLPRTGGVGSARLRDEALIDYLTKFLITMKPLTA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacgcctgccttacatggactagccgccctcacatgtagcgacaaggcgttcgcc
ggactggtgcagcggcacgcccaacccgaactcgacatcaccgcccccgacgcggcccgg
ccgtttgtcgtcgccgccctcgccgaccacgaccgatcgccgctgctggtggtctcggcc
aacggccgcgaggccgacgacctgaccgccgagctggccgagttgctcggcgacccgcgc
gcggtggtgcagttcccgtcgtgggagacactgccgcatgaacggctctccccgagcgcc
gacaccgtcggccggcgcctggcggtactgcatcgcctggcccaccccgagggtgatccg
ctgcgggtggtggtgaccaccgtccgctcgctggtgcagccgatggcgccgggtctgggc
gaggcccggtccatcgacctcgccgagggtatcgagatcgacttcgacggcctgctcgcc
cagctcgtcgaaatggcctacgagcgtgtcgacatggtgggcggccgtggcgaattcgct
gtccgcggaggcattctcgacgtgttcccgaccaccgccgactacccggtgcgggtcgag
ttctggggcgacgagatcagtgagatccgggcgttctcggtggccgaccagcgcagccag
cccgagatcgacgcctccaccgtgcggatccatccgtgccgcgaactggtcctctccacg
caggtgcgggcgcgggctgccgaactcgccggcgaggcgggcgacgaccagatgctgtcg
gagatgctcaccaagctgtcggagggtatcccggtcgccggcatggaggcgctcatcccg
gcactggtcgacggcgagatgcagctgctcacccaggtggtgcccgacggcacccgcgtg
ctgatcctcgacccggagaaggtgcgcacccgcgcggccggcctggccgagaccggcgcc
gaattcctggaggcgtcctggcaggccgcggcggtcggcgccgacgccccgatcgacacc
cgcggcaccgccatcgacctggaggccagcgcgtaccggtcgctggaggcggtgcgccgc
gccacgctgcgcgccggcaaaccgtggtggacgatcagcccgctgtcgtcgggcaccggt
gacgaggtggaactcgaattgaccgccggaccggcgccgcacggcgaggaaccggagatc
aagaagaccttcgcgatgctccgtgcgcacgtcaccggcggcggcaccgcggcgatcgtg
gtggcgggcaagggaaccgcgcaacgcgtgtgcgagcgcctcgccgacgccgaggtgccg
tcgggcctggccgaccccggtgcgacaccggaaccgggccgggtgtcggtgttccacgga
acgctgcgcaacgggctggtgtgcccgggggcgcggctggtgatcgtcaccgaaaccgac
ctcaccggaactcgggtcgcgagcgtccgcgacggccgcaagcttccggccaagcgccgc
aaccaggttgatccgctcgccctgaccgccggtgatctggtggtgcacgatcagcacggc
atcggcaagttcgtcgagatgatcgaacgcaccgtgtccggggcgcgccgcgaatatctg
gtcatcgaatacgcggcgggcaaacgcggccagcccggtgaccggctgttcgtgccgatg
gacgcactcgatcagctctcccggtatgtcggcggtgagcaaccgtcgctgtccaagctc
ggcggctccgactggcagaacaccaaacgtaaggcgcgcaaggccgttcgggagatcgcc
ggtgaactggtgcagctgtacgcggcccggcacgccgcgcccggtttcgcgttcagcccc
gacaccccgtggcagcgggagatggaagacgccttcgacttcaccgagaccgtcgaccag
atgacggtgatcgccgaggtgaaatccgacatggaacgtcccgtcccgatggaccgggtg
atcgtgggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaagcg
gtgcaggacggtaagcaggccgcggtcctggtgcccaccaccattctggcgcaacagcac
ctgcagaccttcagcgaacgcatgaccggtttcccggtgcgagtcaaaggattgtcccgg
ttcaccgacgccaaggaatccaaacagatcatcgacgagatggccacgggcgaggtcgat
atcgtcgtcggcacacaccggctgctgcagaccggcatcgtgtggaaagacctcggcctg
gtgatcgtcgacgaggaacagcggttcggcgtcgaacacaaggagcacatcaagtcgttg
cgcacccacgtcgatgtgctcaccatgtcggccactccgattccgcgcaccctggagatg
tcgatggccggcatccgggagatgtcgacgatcctcaccccgcccgaggaacggcacccg
gtgctcacgtacgtgggtgcgtacgcggccaagcaggtggcggccgccatccgtcgcgaa
ctgctgcgcgatggccaggtgttctacgtgcacaaccgtgtgtccaccatcgacaagacc
gccaaagagatcgccacgatggtgccggaggccaaagtggttgtggcgcacggtcagatg
aatgaggaccagctggagaagacggtcgccgggttctggaaccgcgaattcgatgtgctg
gtgtgcacgaccatcatcgagaccggtctcgacatctccaacgccaacaccctcatcgtc
gaccgggccgagaatctcggcctatcgcagttgcatcagctccgtggccgtgtcggccgc
agtcgcgaacggggctacgcctacctgctgtacagcgccgaaaagccgctcaccgaaacg
gcgtacgatcggctgtcgacgatcgcgcagaacaacgaactcggcgccggcatggcggtc
gcgctcaaggacctcgaattgcgtggcgccggaaacgttctcggcgccgagcagtccggg
cacgtggcgggcgtcggcttcgacctctacgtccggctggtcggggaggcggtggaggcc
tatcgggccgccgccgacggtcagacggtgcagaccgaggagaccgccgaggtgcggatc
gacctaccggtcgacgcgcatatccccgtcgaatacgtggattcggaccggcttcgcctg
gaggcctatcgcaaactggccgccgccacggacgacgacgtcgtcgccgggattctcgcc
gaactcaccgaccggtacggcgaaccgcctgcggagacaaagcgtctcgcgctgatcgcg
cggttgcggctgcggtgccgcgaacgcggcgtcaccgaactcggcgtggtgggcacctcg
gtgaagatcgccccgctcaacctcctcgacagcgagcaggtgcgcctcaaacgcatctac
tcctcggccacctatcgggcgacgacctcggtgatcacgctgccgttgccgcggaccggg
ggagtgggttcggcgcgactgcgcgacgaggcgctcatcgattacctcaccaagttcctc
atcaccatgaaaccgctcaccgcatga
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