KEGG   Gordonia amarae: GII34_07995
Entry
GII34_07995       CDS       T07320                                 
Name
(GenBank) ATP-dependent helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
gam  Gordonia amarae
Brite
KEGG Orthology (KO) [BR:gam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gam03400]
    GII34_07995
Enzymes [BR:gam01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GII34_07995
    5.6.2.6  RNA 3'-5' helicase
     GII34_07995
DNA repair and recombination proteins [BR:gam03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GII34_07995
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_3rd_Lhr WHD_2nd_Lhr WHD_4th_Lhr DEAD Helicase_C AlkZ-like ResIII DUF6406 AAA_25 PhoH
Other DBs
NCBI-ProteinID: QHN21493
LinkDB
Position
complement(1776089..1780825)
AA seq 1578 aa
MATASVLNRFSAPTRRWFTGAFTAPTAAQTGAWSAIADGHNTLVIAPTGSGKTLSAFLWA
LDRLARDTATTETARTGNDKADRPPGTRVLYISPLKALGVDVERNLRAPLTGITRAAQEL
GVPEPGITVGVRSGDTDPAMRRSLVKTPPDILITTPESLYLMLTSAARETLRQVHTVIVD
EVHAVATTKRGSHLVLSLERLDELLERPAQRIGLSATVRPPEAVAGFLGGGAECRIVKPP
AAKTFDLRVDVPVPDMTAIPPPEDADELDDPFSPAAGSLWPHIETSIVDAVERNRSTIVF
TNSRRLAERLTARLNEIHERRLSGDGTLTPRSPNPGVAGGSSAHVMGSGSSAGSLPVLAR
AHHGSVSKDQRAQIEDDLKAGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVAAGLQRI
GRAGHQVGEISQGVLYPKHRTDLLHCTVTVSRMLGGEIESLRIPQNPLDVLAQHTIAAAS
VAELNVDHWFDVVRRAAPYRDLHRSVFDAVLDLVSGRYPSDEFAELRPRVTWDRMAGTLT
GRRGAQRLAVTSGGTIPDRGLFGVFMIGETSARVGELDEEMVYESRVGDVFALGASSWRI
EEITHDRVLVSPAFGQPGRLPFWIGDSVGRPAELGAAIGRFTGTIADPDRLSTQAATLGL
TDFARENLAALVAEQQGATGHLPTDKTLVVERFRDELGDWRVILHSPYGLRVHAAWASAI
SARLQATIGLEGATTASDDGIIVRLPDTDDEPPGAAVFVIAADDIEQLVTDALADSSMFA
SRFRECAARALLLPRRDPGRRAPLWQQRQRSAQLLSVASQFPDFPIVLEAVRECLQDVYD
LPALTDLLTRISTRKVRIVEVETPSPSPFAAAMLFGYVGAFMYNDDAPLAERRAAALSLD
TSLLAQLLGRVDLRELLDPAVIASVVARLQRTAPERAARDADDVVDLLRWLGPLTADQIA
ERYVGEAPLAPLLDELTRSGPLVSVTHRGRPLLAAVEDTARLRDALGVPAPLGVPAAFLE
PLPDPVGDLVHRYARTHGPFTTAEAADHLGMAVAVVAGTLDRLARDRKIIEGDFLPAPPP
PVEVRGAQATSLETPQDNTVLSPGFEARKLAPQPAGGTQWCHADVLAQIRRESLAAIRAD
VAPVSTGTFARFLTDWQHVTGTDRLRGVDGVASVIDQLAGYPLPASAWESLILPARVTDY
SPAMLDELLSSGEVVWAGHGRIGGADGLISLHPADLAPATLAAPTDIDTTALHDRLREIL
APGGALRFGQLTETIDTPDDDIETALWDLVWAGEVSNDSFAPVRALLSPRRSAAQRSATP
AHRGRGRAPRLRAARLSTRYLGEQSLSRPMSPTAAGRWYLPGRHHTATAADNTVLTQALC
DLLLTRYGVVTKGSVMTEGVDGGFARIYKALHVFEDNGQVRRGYYVDGLGGAQFAHPATV
DDLRAHADDGRNRKAPEALVLAASDPANPYGAALDWSSTEGHRPGRKPGALVVLVDGAPV
VFVERGGKTVLTFTDDDATLRAAADALAATVRSGRVERLTVDHIDGTPSLRTPFGQTLVE
AGFATTPRGIRLRYGAHA
NT seq 4737 nt   +upstreamnt  +downstreamnt
gtggccaccgcctccgtgctgaaccgtttctccgcccccacccggcggtggttcaccggc
gcgttcaccgcccccaccgccgcacagaccggggcctggtcggccatcgccgacggccac
aacaccctggtcatcgcccccaccggctcgggtaagacgctgtcggcgttcctgtgggcg
ctcgaccgactcgcccgtgacaccgcaaccacagagaccgcgcgcaccggcaacgataag
gccgatcgaccgccgggcacccgcgtcctctacatctctccgctcaaggcgctcggcgtc
gacgtcgagcgcaacctgcgggccccactcaccggcatcacccgcgccgcgcaggaactc
ggcgtgcccgaacccggcatcaccgtcggcgtgcggtccggtgacaccgacccggcgatg
cgccggtccctggtcaagacgcccccggacatcctcatcaccacccccgagtcgctgtac
ctgatgctcacctcggccgcgcgggagacgctgcggcaggtgcacacggtgatcgtcgac
gaggtgcacgcggtggccaccaccaaacgcggcagccacctggtgctgtcgctcgaacgg
ctcgatgaactgctggaacggcccgcacagcgcatcgggctgtcggcgacggtccgccca
cccgaggcggtggccggattcctcggcggcggcgccgaatgccgcatcgtcaaaccaccg
gcggccaagacgttcgacctgcgcgtcgacgtgccggtgccggatatgacggccatcccg
ccgcccgaggacgccgacgaactcgatgacccgttctcccccgccgccgggtcgctgtgg
ccgcacatcgagacctccatcgtcgacgccgtcgaacgcaatcgctcgaccatcgtgttc
accaactcgcggcgcctggccgaacggctcaccgcccggctcaacgagatccacgaacgc
cggctgtcgggggacgggacactgaccccgcgctccccgaatccgggagtggccggcggc
tcctcggcccacgtcatggggtcgggcagcagcgcgggttcgctgcccgtgctggcccgg
gcccaccacggttcggtgagcaaggatcagcgcgcccagatcgaggacgacctgaaggcg
ggccggctgcgctgtgtggtcgccaccagctccctcgaactcgggatcgacatgggggcg
gtcgatctggtgatccaggtggaggcgccgccatcggtggcggcgggtctgcagcgcatc
ggccgggccgggcatcaggtgggtgagatcagtcagggcgtgctgtatcccaaacaccgc
accgacctgctgcactgcacggtcaccgtctcccggatgctcggcggcgagatcgaatcg
ctacgcatcccgcagaaccccctggatgtgctcgcccagcacacgatcgcggcggcctcg
gtggcagaactgaacgtcgaccactggttcgatgtcgtccggcgggcggcaccgtaccga
gacctgcatcgttcggtgttcgacgcggtcctcgacctggtctccggccggtacccgtcc
gacgagttcgccgaactgcggccgcgggtcacctgggaccggatggcgggcaccctgacc
gggcggcgcggggcgcaacgcctggccgtcacctccggcggcaccatccccgaccgcggc
ctgttcggggtgttcatgatcggtgagaccagtgcccgcgtcggcgagctcgacgaggag
atggtgtacgagtcccgcgtcggcgatgtgttcgccctcggcgcgtcgagctggcggatc
gaggagatcacccatgatcgggtcctggtgtcaccggcgttcggacagccgggccggctg
ccgttctggatcggcgactcggtgggccgcccggccgaattgggcgcggcgataggcaga
ttcaccgggacgatcgccgaccccgaccggctgtcgacgcaggccgcgaccctcggtctc
accgacttcgcccgcgagaacctcgccgccctcgtagctgagcagcagggcgcgacgggg
cacctgcccaccgacaaaaccctggtggtggagcgattccgtgacgagctcggcgactgg
cgggtgattctgcactccccgtacggattacgggtccacgcggcgtgggcgagcgccatc
tccgcacgactgcaggccaccatcggcctggaaggtgccaccaccgcatcggacgacggc
atcatcgtgcgcctccccgacaccgacgacgagccgcccggtgcggcagtgttcgtgatc
gccgccgacgacatcgagcaactcgtcaccgacgcactggccgactcgtcgatgttcgcc
tctcgattccgcgaatgcgccgcgcgcgcactgctactgccgcgccgcgaccccggacgc
cgggcaccgctgtggcagcagcgtcagcgcagcgcccaattactctccgtcgcatcacag
ttccccgactttccgatcgttctggaggctgtccgcgagtgtctgcaggacgtgtacgac
ctgcccgcgctgaccgacctgctcacccgcatcagcacccgcaaagtgcggatagtggag
gtcgagaccccctcgccgtccccgttcgcggcggcgatgctgttcgggtatgtcggcgcg
ttcatgtacaacgacgacgcgccgctcgccgaaagacgcgccgccgcactgtcgttggac
accagcctgctggcgcaactcctcggccgggtcgatctgcgcgaactgctcgacccggcg
gtgatcgcgtcggtggtggccaggttgcagcgcaccgcccccgaacgcgccgcccgcgac
gccgacgacgtggtggacctgctgcgctggctcggcccgctgaccgccgaccagatcgcc
gaacggtacgtcggcgaggcacctctcgcaccgctcctcgatgagctcacacgctccggc
ccactcgtctcggtcacgcaccgcggtcggcccctgctggccgccgtcgaggacaccgcc
cgcctccgtgacgccctgggagtccccgcgccactgggggttccggccgccttcctcgaa
cccctgcccgacccggtgggcgacctggtgcaccgctacgcccgcacccacggcccgttc
accaccgccgaagccgccgaccacctcggcatggccgtcgccgtcgtcgccggcaccctc
gaccgcctcgcccgcgaccgcaagatcatcgaaggcgacttcctccccgcaccccctccg
ccggttgaggtgcgaggagcgcaagcgacgagcctcgaaaccccacaagacaacactgtt
ctctcaccaggtttcgaggctcgcaagctcgcacctcaaccagcgggtggtactcagtgg
tgccacgccgacgtcctcgcccagatccgccgcgaatccctggccgcgatccgcgccgac
gtcgcccccgtctccaccggcaccttcgcgaggttcctcaccgactggcagcatgtgacg
ggcacggaccggctgcgcggcgtcgacggtgtggcatcggtcatcgaccaacttgccgga
tatccgctgccggcctcggcatgggagtcgctgatcctgcccgccagggtcaccgactac
tcccccgcgatgctcgatgaactgctgtcgtccggggaggtggtgtgggccgggcacggc
cggatcggcggcgccgacggcctgatcagcctgcaccccgccgatctcgcccccgccaca
ctcgccgcccccaccgacatcgacaccaccgctctgcacgaccggctccgcgagatcctc
gccccgggcggtgcgctgcgcttcgggcagctcaccgagactatcgacacccctgacgat
gacatcgagacagcactgtgggatctggtgtgggccggtgaggtcagcaacgattcgttc
gcgccggtgcgggcgctgctgtccccgcgacgctccgccgctcagcggtccgcgacgccc
gcgcaccgcggccggggccgcgccccccggctccgggccgcccgcctgtcgacgagatac
cttggcgaacagtcactctcacgtccaatgagtccgacagcggcaggccgctggtatctg
ccgggccgccaccacacggccaccgcggccgacaacacggtactcacccaggcgctgtgc
gacctgctgctcacccggtacggcgtggtcaccaagggcagcgtcatgaccgagggtgtc
gacggcgggttcgcgcggatctacaaggcgctgcacgtcttcgaggacaacggccaggtg
cgccgcggctactacgtcgacggcctcggcggcgcccagttcgctcatccggccaccgtc
gacgacctgcgcgcccacgccgacgacggccggaacaggaaagctcccgaagccttggtg
ctcgccgcctccgaccccgccaatccgtatggcgcggccctggactggtcgtccaccgag
ggtcatcgccccggccgcaaacccggcgccctggtggtgcttgtcgacggcgctccggtg
gtgttcgtcgaacgcggcggcaagacggtcctgacgttcaccgacgacgacgcgacactg
cgcgccgcggccgatgcgttggccgcgacggtccgttcgggccgcgtcgaacgcctgacc
gtcgaccacatcgacggcaccccatccctgcgcaccccgtttgggcagaccctggtcgag
gccggtttcgccaccaccccccgcggcatccgcctcaggtacggcgcgcatgcgtaa

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