Gordonia amarae: GII34_08550
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Entry
GII34_08550 CDS
T07320
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gam
Gordonia amarae
Pathway
gam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII34_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gam03021
]
GII34_08550
03019 Messenger RNA biogenesis [BR:
gam03019
]
GII34_08550
Transcription machinery [BR:
gam03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GII34_08550
Messenger RNA biogenesis [BR:
gam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GII34_08550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
GETHR
NACHT
VWA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHN24272
LinkDB
All DBs
Position
1911747..1913594
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AA seq
615 aa
AA seq
DB search
MVLTELRALAGELGIKGTSGMRKGDLIAAIKERQGGERPSGTDQLTLTPDEPKSADAAKA
VKTKAPRTTRATRAAKAPAEPQDAPSAPEMEPAAQPADSGAAQARSAEPAQKESGKNESG
KNESGRGESPRAEGGDQQDSPQGEGRGRNRNRNQQGQNTNQRGENQRGENQRGENQRGEN
QQGKNQQGGGQNGPRDDDEDGGGRGRRGRRFRERRRGRDRDSSTAGEPQISEDDVLQPVA
GILDVLDNYAFVRTSGYLAGQNDVYVSMNLVRRYGLRRGDAVTGAVKVLKDGEQPNQRQK
FNPLARLDTVNGGDPEAARKRPEFNKLTPLYPNQRLRLETTPERLDTRVIDLIMPIGKGQ
RALIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF
DRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDST
ALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGTGNAELKLDRKISER
RVFPAVDVNLSSTRKDELLLSPEEFSIVHKLRRVLSGLDSQQAIDLLISQLKKTKTNIEF
LMQVQTNAPGAMKDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtcctcaccgaattgcgtgctctggccggtgagctgggcatcaaaggcacctcgggc
atgcgtaaaggcgatctcatcgccgcgatcaaggaacgccagggcggcgaacgtccaagc
ggcaccgaccagctcaccctgacccccgacgagcccaagagcgcggacgcggccaaggcc
gtgaagaccaaggcgccccggaccacccgggcgacccgcgccgccaaggccccggcggag
ccgcaggacgcgccgagcgcgcccgagatggagcctgccgcacagcccgccgacagcggt
gccgcgcaggcacgcagtgccgaaccggcccagaaggaatcaggcaagaacgagtccggc
aagaacgagtccggtaggggcgagtcgccccgggccgagggcggcgaccagcaggacagc
ccccagggcgagggccgcggccgcaaccggaaccgcaatcaacagggccagaacaccaac
cagcgcggcgagaaccagcgcggggagaaccagcgcggggagaaccagcgcggggagaac
cagcagggcaagaaccagcagggcggtggccagaacggcccgcgcgacgacgacgaggac
ggcggtggccgcggccggcgtggccgccggttccgtgagcgccgccgcggacgcgaccgc
gactcatccaccgcgggtgagccgcagatctccgaggacgacgtcctgcagcccgtcgcg
ggcattctcgatgtcctcgacaactacgccttcgtacgcacctccggctatctggccggg
cagaacgacgtctacgtgtcgatgaatctggtgcgccgctacggattgcgccgcggcgac
gcggtgaccggcgcggtgaaggtactcaaggacggcgaacagcccaaccagcggcagaag
ttcaatccgctggcccgactggacaccgtcaacggcggcgatcccgaagccgcccgcaag
cgccccgagttcaacaagctcaccccgctgtacccgaatcagcggctgcgcctggaaacc
acgcccgagcgtctcgacacccgcgtcatcgacctgatcatgcccatcggcaagggtcag
cgtgcgctgatcgtgtcgccgcccaaggctggtaagaccacgatcctgcaggacatcgcc
aacgcgatcaccaccaacaaccccgaatgccacctgatggtggtgctggtggacgagcgt
cccgaagaggtcacagacatgcagcgttcggtgaagggtgaggtcatcgcctccaccttc
gaccggccgccgtcagaccacacctcggtggccgaactggccatcgagcgggccaagcgc
ctcgtggagcagggcaaggacgtcgtcgtgctgcttgactcgatcacccgtctcggccgc
gcctacaacaacgcctcgccggcgtccggacgcatcctgtccggtggtgtcgactcgacg
gccctgtacccgcccaagcggttcctcggtgcggcccgcaacatcgagaacggcggttcg
ctcacgatcatcgcgtcggcgctggtggagaccggatcgaccggtgacacggtcatcttc
gaggagttcaagggcactggcaacgccgagctcaagctcgaccgtaagatctccgaacgc
cgggtgttccccgcggtcgacgtgaacctgtcgagcacccgcaaggatgagctgctgctc
tcgcccgaggagttctcgatcgtgcacaagctgcgccgcgtgctcagtggtctcgactcg
cagcaggctatcgacctgctgatctcgcagctcaagaagaccaagaccaacatcgagttc
ctgatgcaggtccagacgaacgcccccggcgccatgaaggacgactga
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