Gordonia amarae: GII34_08890
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Entry
GII34_08890 CDS
T07320
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
gam
Gordonia amarae
Pathway
gam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GII34_08890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gam03000
]
GII34_08890
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_08890
Enzymes [BR:
gam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GII34_08890
Transcription factors [BR:
gam03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GII34_08890
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GII34_08890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QHN24279
LinkDB
All DBs
Position
1991578..1993101
Genome browser
AA seq
507 aa
AA seq
DB search
MTFDERYGAVKARDRRFDGQFIIAVRSTGIYCRPSCPARTPKPSNVEFYPTSAAAHEAGY
RACKRCLPEAAPGSPEWNLRRDTVGRAMRLIADGVVEREGVATLAARLGYSPRHLTRLLT
AELGAGPLALARSQRAHTARMLLTGTDLPVSDVAFSAGFGSIRQCNDTIREVFAMTPTQL
REQSRTATTTPGVIDLVLPVREPFDATGIFRWMVARCLPGMEHATDTSFARGLSLPGGTA
WFEVRADTAGRIRLRASLSDPADLGPLVVRVRRLFDLDSDPLAVDTALAEHAELKPLVAR
TPGMRVPGAADPHEMLIRAMVGQQVTVAAARTALTRLVDELGATVDAPDGASDLLFPTRL
FPTRLFPTRLFPTMAAIAEHGHEVLRGPAARIRAITGAATALAAGTLTLTSADDGAEQRT
ALLALPGIGPWTADYVRMRVLGDPDVLLPGDSGVRTGAATAGLPSEPRSLSEWASRVAPW
RSYLTAHLWRTDSMEDAQACPPRNPVR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgacgagcgctacggcgccgtcaaggcgcgtgaccggcgtttcgacggccag
ttcatcattgcggtgcgcagcaccggaatctactgccggccgtcgtgtccggcccgcaca
cccaaaccttcgaatgtggagttctatccgacgagcgcggccgcacacgaagccgggtac
cgggcctgcaaacgttgtctgccggaggccgcacccgggtcgccggagtggaatctgcgg
cgcgacaccgtcggtcgtgcgatgcggctcatcgccgacggcgtcgtcgaacgcgagggc
gtggcgacgctcgcggccaggctcgggtactcgccgcggcatctgacccggttgctcacc
gcggaactgggggcgggaccgctggccctggcacgttcgcagcgggcacataccgcgcga
atgttgttgaccggcaccgaccttccggtgtccgacgtcgcgttctcggccggtttcggg
agcattcgccaatgcaacgacaccatccgcgaggtcttcgcgatgacccccacccagctg
cgcgagcaaagtcgcacggccacaacgactcccggcgtcatcgatctggtgctgccggtc
cgggaaccgttcgatgcgaccggcatcttccggtggatggtggcacggtgtctgcctggg
atggaacacgccacagacacttccttcgcccggggcctctcgttgcctggtggcacggca
tggttcgaggtgcgtgccgacaccgcaggccgaatccggttgcgcgcaagcctctccgat
cctgccgacctcggaccgctcgtcgtgcgtgtccggcgcctgttcgatctcgactccgac
ccgctcgccgtcgataccgcgctggccgagcacgctgaactgaagccactcgtcgcaagg
acgcccgggatgcgggttcccggtgccgcagatccccacgagatgctgattcgggcgatg
gtcggacagcaggtcacggtggcggcggcgcgcaccgccctcactcggctggtcgacgaa
ctcggcgccaccgtcgacgcccccgacggcgcatcggacctgctgttcccgacgcggctg
ttcccgacgcggctgttcccgacgcggctgttcccgacaatggcggcgattgccgagcac
ggccacgaggtcctgcgcggaccggcggcccggatccgggcgatcaccggtgccgccacc
gcactcgccgccggtaccctaacgctgaccagcgccgacgacggcgccgaacaacgcacc
gcgctgttggcactccccggtatcgggccgtggaccgccgactacgtgcggatgcgagtg
ctcggcgaccccgacgtgttgttgcccggcgacagcggggtgcggacgggcgcggcgacg
gccggtttgccttccgagccgcggagcctctccgaatgggcgtcgcgagtagcgccctgg
cgcagctacctgaccgcgcacctgtggcgaaccgattcgatggaagatgcgcaggcctgc
ccgccccgaaacccggtgcgctga
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