Gordonia amarae: GII34_08950
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Entry
GII34_08950 CDS
T07320
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gam
Gordonia amarae
Pathway
gam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII34_08950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gam03019
]
GII34_08950
03009 Ribosome biogenesis [BR:
gam03009
]
GII34_08950
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII34_08950
Messenger RNA biogenesis [BR:
gam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII34_08950
Ribosome biogenesis [BR:
gam03009
]
Prokaryotic type
rRNA helicases
GII34_08950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
QHN21644
LinkDB
All DBs
Position
2006112..2007947
Genome browser
AA seq
611 aa
AA seq
DB search
MTPASESESTSGETTTERPNRNTDEPGAGGFDGLGIDDRVLEAISDVGYESPSPIQAATI
PVLMSGRDVVGLAQTGTGKTAAFAIPILSRLDDSARKPQALILAPTRELALQVAEAFGKY
SAHMPKVKVLPIYGGQSYVVQLNGLKRGAQVIVGTPGRVIDHLDRGTLDISELEFLVLDE
ADEMLTMGFAEDVERILADTPDSKQVALFSATMPKAISRLAQQYLNDPEEIKVKAKTETA
SNITQRYLQVSHQRKLDALTRFLEVEQFDAMIVFVRTKQATEELAEKLRSRGFSAVAING
DLAQAQRERTINQLKNGTIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG
RAGRSGNALLFVSPRERHLLRAIEKATRSTLAEIGLPSVEDVNAQRVAKFAESITENLGS
EHLDMFRKLIEDYARDNDVTMADIAAALALETRDGGFLMAPDPPQRERGERGERGDRPER
RERAPRRPGANFATYRIAVGRVHRVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELP
DDLDAETLASLRHTRIGKNPIDIRRDQGPPRARGGAKRAGQGARGYGRDGGRRGEQWGKR
GNPKVAGRPRG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacacccgcatccgaatccgaatcaacgtccggcgagacgaccaccgagcggccgaac
cggaacaccgacgagcccggtgccggaggcttcgacggtctgggtatcgacgaccgcgta
ctcgaggccatctccgatgtcggctatgagtctccctcgccgatccaggcggccaccatc
ccggtcctcatgtcggggcgcgatgtggtgggcctggcgcagaccggaaccggcaagacc
gcggccttcgccatcccgattctttcgcggctcgatgactccgcccgcaaaccgcaggcc
ctgatcctggcgccgacccgtgaactcgccctgcaggtggccgaggcgttcggcaagtac
tcggcccacatgcccaaggtgaaggtactgcccatctatggcgggcagagctatgtggtc
cagctcaacggactcaagcgcggcgcgcaggtcatcgtcggcacacccgggcgcgtcatc
gaccatctcgatcgcggtaccctcgatatctccgaactggagttcctcgttctcgacgag
gccgacgagatgctcacgatgggctttgccgaggatgtggagcgcatcctcgccgatacc
ccggactccaagcaggtcgcgttgttctcggcgacgatgcccaaggccatctcgcggctg
gcgcagcagtacctgaacgatccggaggagatcaaggtcaaggccaagaccgagaccgcc
tccaatatcacccagcgctatctgcaggtgtcgcatcagcgcaagctcgacgcgctgacc
cgtttcctcgaggtcgagcagttcgacgcgatgatcgtgttcgtccgcaccaagcaggcc
accgaggaactggccgagaagctgcgttcgcgcggattctcggcggtggcgatcaacggc
gacctcgcgcaggcgcagcgcgaacgcaccatcaaccagctcaagaacggcaccatcgac
atcctcgtggccaccgatgtggcggcccgcggcctcgacgtcgaccggatctcgcacgtg
gtcaactacgacatcccgcacgacaccgagtcgtacgtgcaccggatcggccgcaccggc
cgggccggacgttcgggcaacgcgctgttgttcgtctcgccgcgcgagcggcacctgttg
cgcgccatcgagaaggccacccggtccacgctcgccgagatcgggctgcccagcgtcgag
gatgtcaacgcccagcgtgtggccaagttcgccgagtcgatcaccgagaacctcgggtcc
gaacatctcgacatgttccgcaagctcatcgaggactacgcccgcgacaacgacgtgacg
atggccgacatcgcggccgccctcgcgctcgagacccgcgacggcggtttcctcatggcg
cccgacccgccgcagcgcgagcgtggcgagcgcggcgaacgcggcgataggcccgagcgc
cgggagcgcgcgccgcgccgcccgggagccaacttcgccacttaccgtatcgccgtcggc
cgcgtccatcgggtgtcgccgggcgcgatcgtcggggcgatcgccaatgagggcggtctc
acccggggtgatttcggtaacatttccatccgcgacgacttcagtctcgttgagcttccg
gacgatctcgacgccgaaaccctggcgtctctgcggcatacccggatcggtaagaacccg
atcgacatccgtcgcgaccaggggcccccgcgtgcccggggtggcgccaaacgcgctggt
cagggcgctcgcgggtacggccgtgacggcggcaggcgaggcgagcagtggggcaagcgg
ggcaacccgaaggtggcgggccggccgcggggctga
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