Gordonia amarae: GII34_10320
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Entry
GII34_10320 CDS
T07320
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gam
Gordonia amarae
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gam03019
]
GII34_10320 (hrpA)
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GII34_10320 (hrpA)
Messenger RNA biogenesis [BR:
gam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GII34_10320 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
ABC_tran
T2SSE
NACHT
AAA_30
TsaE
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QHN21878
LinkDB
All DBs
Position
complement(2318932..2322930)
Genome browser
AA seq
1332 aa
AA seq
DB search
MSAASDSSSGPTPAASSATSDGEVSVGALRQLLPELTVADGFRFRRRLDKLGRNPKPQVL
KSIEREIAAAGTRVDARRARTPRIDYPAELPVSAAREEIAAAIEAHQVVVIAGETGSGKT
TQLPKICLEAGRGIRGTIGHTQPRRIAASSVAKRIADETGTEIGDAVGYSVRFTDRSGAN
TLVKVMTDGILLREISTDPMLRAYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVII
TSATIEPGRFAQHFAVPDNPDVPIIEVSGRTYPVEVRYRPLTSRDAPDSEHDHADLDQLQ
GVDAAITELWAHERGDILVFLPTERDIRDTADALKRRAAAGAEIVPLFARLSIADQQKVF
SPSDGRRIVLATNVAETSLTVPGIRYVIDVGTARISRYSTRTKVNRLPVEPVSQASARQR
AGRCGRVAPGICIRLYSEDDFDSRDAFTDPEILRTNLASVILQMASLRLGDIAEFPFVQA
PDARAIRDGLGTLLELAAITETSTGTADEPDTRSLRSRGPQLTEVGRTMARLPVDPRLAR
MLVEAHTLGCLDHVLVIASALSIPDVRERPADAREAADTAHRRFVGDKSEFLGHLMLWNY
LEDKRKELSGNQFRRMCEREFLHFLRIREWRDLHAQLTRIVRDLDWQIPDVEVDPDAVHR
SVLSGLLSNIAVRNGDTREYSGARGTTLAIFPGSALAKKPPAFIMAAEILETSRLFAHTV
AAVDPLWAERLAGDLVKRVYSEPHWSQRRGAAMAYEKVTLYGVTLVARRRVNYGTIDPVV
SRELFIRHALVDGEWTTEHAFFQKNRDLLDAVDDIEQRIRRRDISITEDQLFDFYDARVG
ADCVSTRHFDTWWKKTRRTRPDLLDLDPAQFATVVPNADKDFPPAWRQGEATLELRYRFD
PTAGDDGVTVVIPEPLLTHVRPAGFDWLVPGLRGEVATELIKTLPKHIRKTMAPAGRFAD
LALSRLKPRSEPLVAGLARELSVITGSTITPADFRPATLPKHLTMNFSVVDGSGREIAAG
RSLPELRKTLTTTGAARAPKAPTYTDWTADGIGTLAESTTTTVAGQKVTHFPALLTVPVG
PRFGVQVTAAVSAAERDRRHPVAVAALFDHRIPALTPKITAGLDPRGRLSLSQSPYRERD
RMVADCTYRAIRDAVAADPAAVSAVRSPDAFERLLTTLSPQVRSAAPEYFSAAIAALREV
APLRGLIDLHAGSAAADDVAEQLDNLIFDGFIAATPLSALRHLPRYLQAAQQRLEALPAG
ADRDTQGLRSIDRVIEHWNARLAKVPATRRDAVNDAAQWLVEELRVGLFAQRLGTAYPVS
EKRIIKAIDALR
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagcctctgattcctcctccggtcccacgccggcagcctcttccgcgacatcg
gacggcgaggtgtctgtgggcgctctccggcagctcttgccggaactgacggtcgccgat
ggattccgcttccgcaggcgcctcgacaaactcggacgcaacccgaaaccgcaggtcctg
aagtcgatcgagcgcgagatcgccgccgccggcacccgggtcgatgcccggcgcgcccgc
acgccacggatcgattatccggccgagctgccggtcagcgccgcgcgtgaggagatcgcg
gccgcgatcgaggcgcatcaggtcgtggtgatcgcgggcgagaccgggtccggtaagacc
acgcagctgcccaagatctgtctggaagccgggcgcgggatccgcggcaccatcgggcac
acccagccccggcgcatcgccgccagttccgtggccaaacgcatcgccgacgagaccggc
accgagatcggtgacgccgtcggctattcggtgcgcttcaccgaccggtccggggccaac
acgctggtcaaagtgatgaccgacggcatcctgctgcgggagatctccaccgacccgatg
ctgcgcgcctacgacactctcatcatcgacgaggcccacgaacgcagcctcaacatcgac
ttcatcctcggctacctcaaacaactgctgccccggcgtccggacctgaaggtgatcatc
acctccgcgacgatcgaacccggccggttcgcacagcatttcgccgtcccagacaacccc
gacgtccccatcatcgaggtatcgggacgcacctatccggtcgaggtccggtaccgcccg
ctcacctctcgcgacgcgcccgactccgaacacgatcacgccgacctcgatcagctccag
ggcgtcgacgccgcgatcaccgagctgtgggcacacgagcgcggcgacatcctggtgttc
ctgcccaccgagcgcgatatccgcgacaccgccgacgcactgaagcgccgggcggctgcc
ggagccgagatcgtgccactgttcgcgcggctgtcgatcgccgaccagcagaaggtgttc
tccccctccgacggacggcggatcgtgctggccaccaacgtcgccgagacctcgctcacc
gtacccggcatccggtatgtcatcgacgtcggcaccgcgcgcatctcccggtattcgaca
cgcaccaaggtcaaccggctgcccgtcgaaccggtctcgcaggccagcgcccgccagcgt
gccggccgctgcgggcgcgtcgcacccggcatctgcatccggctctacagcgaggacgac
ttcgacagccgcgatgcgttcaccgatcccgagatcctgcggaccaacctggcgtcggtg
atcctgcagatggcctcgctgcggctcggtgacatcgccgagttcccgttcgtgcaggcc
cccgacgcgcgcgccatccgcgacggtctgggcacgctgctggagctggccgcgatcacc
gagacgtcgacaggcacagcagacgagcccgacacacgttccctgcgctcccgcggccca
cagctcaccgaggtgggccgtacgatggcgcggttgcccgtcgacccccgcctggcgcgg
atgctggtggaggcgcacactctcggctgcctcgaccacgtgctcgtgatcgcctcggca
ctgtcgataccggacgtgcgcgaacgccccgccgacgcccgcgaggccgcggacaccgcg
caccgccgcttcgtcggcgacaagtcggagttcctcggccacctcatgctgtggaactac
ctggaagacaagcggaaagaactgtcgggcaaccagttccgccgcatgtgcgaacgcgag
ttcctgcacttcctgcgtatccgcgaatggcgggatctgcacgcgcagctgacccggatc
gtgcgcgatctcgactggcagatccccgacgtcgaggtcgaccccgacgcggtgcaccgg
tcggtgctgtcggggctgctgagcaacattgccgtccgcaacggtgacacccgcgaatac
tccggcgcccgcggcaccacgctcgcgatcttccccggatccgcgctggccaagaagcct
ccggcgttcatcatggcggccgagatcctcgaaacctcacggctgttcgcgcataccgtt
gccgccgtcgacccgctctgggctgagcgtctggccggggatctggtcaagcgcgtctac
agcgaaccgcactggtcgcagcggcgcggcgcggcgatggcatacgagaaggtcaccctg
tacggggtgacgctcgtggcccgccgccgcgtcaactacggcaccatcgacccggtcgtg
tctcgggaactgttcatcaggcacgccctcgtcgacggtgaatggaccaccgagcacgcg
ttcttccagaagaaccgtgacctgctcgacgcggtcgacgacatcgagcagcgcatccgc
cgccgcgacatctcgatcaccgaggatcaactgttcgacttctacgacgcccgggtcggc
gccgactgcgtatccacgcggcatttcgacacctggtggaagaagacccgacgcacccgg
cccgacctgctcgacctcgacccggcccagttcgccaccgtggttcccaacgcggacaag
gactttccgcccgcgtggcgacagggcgaggcgaccttggaactgcggtaccggttcgat
ccgaccgcgggcgacgacggtgtcaccgtggtcatccccgaaccactgctgacgcatgtg
cgtccggcgggcttcgactggctggtgccgggactgcgcggtgaggtggccaccgagctg
atcaagacgctgccaaaacacatccgcaagacgatggccccggcaggccgcttcgccgac
ctggcgctctcgcggctcaagccgcgatcggaaccacttgtggccgggctggcgcgcgaa
ctgtcggtgatcaccggttcgacgatcaccccggccgacttccggccggcgacgctgccc
aagcatctgaccatgaacttcagcgtggtcgacggctccgggcgcgagatcgcggcaggc
cggtcgctgccggaactccgcaagacactgacgacgaccggtgccgcccgcgcaccgaag
gcgccgacctacaccgactggacggccgacgggatcggcaccctcgccgagtcgaccacc
acaaccgttgccggacagaaggtcacgcatttcccggcgttgctcaccgtgccggtcggg
ccccgattcggggtgcaggtcactgccgcggtgtccgccgcggaacgagaccgccgccat
ccggtggccgtcgccgcgctgttcgaccaccgcatcccggcactcacacccaagatcacg
gccgggctcgatccgcgaggcaggttgagcctgagccagagcccgtaccgtgagcgcgac
cggatggtcgccgactgtacctatcgggcgatccgcgacgcggtcgcggccgatcccgcg
gccgtctcggcggtacgatcccccgacgccttcgaacggctgctcaccacgctgagtccg
caggtgcgttcggctgcgcccgaatacttttcggcggcgatcgcggcgctccgcgaggtc
gccccactacgcggcctcatcgacctgcacgcaggctcggcggccgccgacgatgtggcc
gaacaactcgacaacctcatcttcgacggattcatcgccgccacgcccctgtccgcccta
cggcatctaccccgttatctgcaggccgcgcaacagcgtctcgaggcacttccggccggc
gcggaccgggacacacagggtttgcgctcgatcgaccgggtcatcgaacactggaatgcc
cggctcgcgaaggtaccggccacgcggcgggacgcggtcaacgacgcggcgcagtggctg
gtcgaagaactgcgggtcgggctgttcgcccagcgtttgggcaccgcctacccggtgtcg
gaaaaacggatcatcaaggcgatcgacgcactgcgctga
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