Gordonia amarae: GII34_13035
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Entry
GII34_13035 CDS
T07320
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gam
Gordonia amarae
Pathway
gam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GII34_13035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_13035
Enzymes [BR:
gam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GII34_13035
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GII34_13035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_25
AAA_11
DUF6574
Motif
Other DBs
NCBI-ProteinID:
QHN22338
LinkDB
All DBs
Position
complement(2921147..2924539)
Genome browser
AA seq
1130 aa
AA seq
DB search
MTTASGSPAAGDAATPASFDITAPLPNGTTVLEASAGTGKTYAIVGLAARRVAEGMPIDQ
VLLVTFSRAASAELRERMRERVQGLCLALADPDTARRSPDRLERFLATGDSVEVARRREN
LQRALSDFDASTIATTHTFCNRMLEALGFLGEREPVAAIVEDVDEMVAEAARDLYMDGFK
DAEHPEFGFGAAEGIAKDAMRNPAAVLSPDESELSEPGSPEAEAVLRRVRFTRKVRQIVE
RRKRESRIRTYDDLQAILHRIVCDPEAGPDACARIREQFGVVLIDEFQDTDPQQWEIVRR
CFHGHLPLVLVGDPKQSIYGFRGAEVLSYLSAVRSADQRLALDTNHRSDGDLVTALGRIY
GGAQLGHPEIVAREVAAARPGSQISGAVPLRIRAVVRNDCKGRTAFGASGFPSVDYLRPR
VTEDAADDIAALLGSAVTIGDDNRPVRPGDIAVLVRANKTVEPLRRALAERGIAAVVGSG
ASVFRTAGARHWLWMLTAIESPARTNNVRLAATTPLIGWSAATLADADDERISALAAHFA
EWGRVFTEAGFSAMAARIVDQMAVASRVLAAPHGERALTDLLQVAAICNRQVMDQGWGLS
ELTEWLTDRVADIASHARSDDQVRRLESDAQAVQIMTVHASKGLQFPIVYLPFAWDSLHT
PDDATIMYHDETGARRLDVGGKEAPGRTWRWARAHAETVAEELRLLYVAATRARSQVVMW
WAPAYGTRTAPLHRLIFGRPGSSAVGGAGRPRVWEVPDAVEVPDDGAVVAGLRGVSDGAL
ITVEPARAAHTAWTDPARDLPTGALSAARFTREIDQTWRRTSYSAITAGAHGSASPVTAG
SEPDDDMRVRTDDDSEDTADPLEAPVVVAESPTASLMNGLPFGAAFGTVVHEALEYVDTS
APDIDAHVRELVSESVGAADIDIDVLTRALVGVLTTPLGFGDLWSIPTRDRLSELDFEFP
LGDDVAAGFTVAAVADLLDRYLSADDPLSGYADHLRELPAQTYRGFLTGSIDSVLRRPDG
RFTIVDYKTNRLRPGDLVAEDFTVEAMAAEMIANHYPLQALIYSVALHRFLRWRLPGYEP
GECLGPAQYHFVRGMIGLSTPVGCGVFEWHIPAELVVALSDLIAGMEVTR
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgcatccggcagccctgcggccggggacgccgccacaccggcatcgttcgat
atcaccgcgcccctcccgaacggcaccacggtactggaggcgagcgccggtaccggcaaa
acgtacgcgatcgtcgggctcgcggcccgccgcgtcgccgagggcatgccgatcgaccag
gttctgctggtcaccttcagccgcgccgccagcgccgaactgcgggagcggatgcgggag
cgggtacagggcttgtgcctggcgctcgccgacccggacacggcacggcgatcaccggac
aggctcgaacgtttcctcgccacaggcgactcggtggaggtggcccggcggcgcgagaac
ctgcagcgggcgctgtcggactttgacgcgtcgaccatcgccaccactcacacgttctgt
aaccggatgctggaggcgctcggctttctcggtgaacgggaacctgtcgcggccatcgtc
gaggatgtggacgagatggtcgccgaggccgcgcgcgacctgtacatggacggcttcaag
gacgcagagcatcccgagttcggtttcggtgcggccgaaggcatcgccaaggatgcgatg
cgcaatccggcggccgttctgtcaccggacgaatccgaattgtccgaaccgggttcgccg
gaggccgaggcggtgctgcgccgggtgcgtttcacccgcaaggtgcggcagatcgtcgag
cggcgcaaacgtgagtcgcgtatccggacctacgacgacctgcaggcgatcctgcaccgg
atcgtgtgcgaccccgaagccggccccgatgcgtgcgcacgtatccgtgagcagttcggt
gtggtgctcatcgacgaattccaggacaccgacccgcagcagtgggagatcgtgcgccgc
tgcttccacggccacctgccgttggtgctggtgggcgatccgaagcagtcgatctacggt
ttccgcggtgcggaggtgctgagctacctgtcggcggtccggtccgccgaccagcgtctc
gctctggacaccaaccatcgctccgacggcgacctggtcaccgcactcggccgcatctac
ggtggagctcagctcggtcacccggagatcgtcgcgcgtgaggtcgccgcggcgcgcccg
ggcagccagatctccggtgcggtgccgttgcggatccgcgcggtggtccgcaacgactgc
aagggccgtaccgcgttcggcgccagcggattcccgtcggtcgactacctccggccgcgg
gtgaccgaggacgccgccgacgacatcgccgcgctgctgggttcggccgtgacgatcggc
gacgacaaccgcccggtgcgccccggggacatcgccgtgctcgtgcgggccaacaagact
gtcgagccgttgcggcgggcgctggccgaacggggtatcgcggccgtggtcggctcgggg
gcaagtgtgttccgtaccgcgggtgcccggcactggctgtggatgctgaccgcgatcgag
tcgccggcccgcaccaacaatgtccggctggcagcgaccacccccctcatcgggtggtcg
gcagccaccctcgccgatgccgacgacgagcggatttcggcgctggcagcacatttcgcc
gaatggggccgggtgttcaccgaagccggattctcggcgatggcggcgcggatcgtcgac
cagatggcggtggcctcccgcgtgctggcggcaccgcacggcgagcgcgcgctgaccgat
ctgctgcaggtggccgcgatctgcaaccggcaggtgatggaccagggctggggattgagc
gaactcaccgaatggctgaccgaccgtgtcgccgacatcgcctcccacgcccgcagcgac
gaccaggtccgccggctcgaatcggatgcgcaggccgtgcagatcatgacggtgcacgcc
agcaagggactgcagttcccgatcgtctacctgccctttgcctgggacagcctgcatact
cccgacgacgccacgatcatgtaccacgacgagaccggtgcgcgtcgtctcgacgtgggc
ggcaaggaggcgccaggccggacctggcggtgggcgcgggctcacgccgaaacggtcgcc
gaggaactacgcctgctgtatgtggcggcgacgcgggcacgttcgcaggtggtgatgtgg
tgggcacccgcgtacggcacccgcacggcaccgttgcaccggctgatcttcggccgcccg
ggtagttccgcggtcggtggtgcggggcgtccccgggtgtgggaggtgcccgacgccgtc
gaggtccccgacgacggtgcggtggtcgcgggactgcggggtgtgtccgacggtgcgctg
atcaccgtcgagccggcccgtgccgcgcacaccgcgtggaccgacccggcccgcgacctg
cccaccggggcgctgtccgcggcgcggttcacccgcgagatcgaccagacctggcgtcgc
acctcgtattcggcgatcaccgccggcgcacacgggtccgcgtcaccggtcaccgcgggc
agcgaacccgatgacgatatgcgggtgcgcaccgacgacgactccgaggacaccgcggat
ccgttggaagcaccggtggtcgtggcggaatcgccgacggcgtcgctgatgaacgggttg
ccgttcggtgcggcgttcggcaccgtcgtacacgaggcactcgaatacgtcgacacctct
gccccggacatcgatgcccatgtgcgcgagttggtctccgaatcggtgggtgccgccgac
atcgacatcgacgtcctcacccgggcgctcgtcggggtgctcaccacaccgctggggttc
ggtgacctgtggtcgattccgacgcgagaccggctctcggaactcgacttcgagtttccg
ctcggcgacgacgtggctgccgggttcacggtggccgcggtggccgacctgctcgaccgg
tacctgtccgccgacgatccgctgtccgggtatgccgaccacctgcgggaactgcccgct
cagacctatcgtgggttcctcaccggcagtatcgactcggtgctgcgccgccccgacggc
cgcttcaccatcgtcgactacaagaccaaccggctgcggcccggggatctggtggccgag
gatttcaccgtcgaggcgatggccgctgagatgatcgccaatcactatccactacaggca
ttgatctattcggttgccctgcacaggtttctgcgatggcgattacccggatacgagccg
ggtgagtgtctgggcccggcccagtatcacttcgtgcgtggcatgatcgggctgtccaca
cccgtcggttgcggggtgttcgaatggcacatacccgccgaactcgttgtcgcactgtcc
gatctgatcgccggtatggaggtgacccgatga
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