Gordonia amarae: GII34_13040
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Entry
GII34_13040 CDS
T07320
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
gam
Gordonia amarae
Pathway
gam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GII34_13040 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_13040 (recC)
Enzymes [BR:
gam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GII34_13040 (recC)
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GII34_13040 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QHN22339
LinkDB
All DBs
Position
complement(2924536..2928093)
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AA seq
1185 aa
AA seq
DB search
MLIVHRAERTDALAGVLAGVLAEPLTPSGGGQADPFAPEIVSVPARGVERWLQQHLARTL
GTGSAGGHDGISANIDFPSPADLADRIVAAVNSGVPFSATGDGRTDDPWRPGRLVWPVLR
VLDESLDDAAFRVIARHVGVQPAGPNRPDSTVDDAEYRRGRRYSTARQIADLFTRYATAR
PAMLAGWITGPVDGVDLDGTGAAVADGMAWQPGFFRAVHDEIGVPHPAEYLGTVCDRLRA
DPEAGSLPARLSVFGPTRISESFRQLLTATAEHHDVHLYLPHPSPVLWSAGPSALRADGA
PRRPAPPVTRKQWERPMPRHPLLASLARDVGELQERLTGIADRDLHHDIDGAESMSLLHA
LQAGLRDDHLLPGGTVDDGSVEVHSCHGPHRQVEVLRDRLLHLFSADPTLQPRDVLIMCP
DVETFSPLIRGAFGQTGLDHPAFSLRVRMADRVVRQLNPVLEVIAHVVGLAAGRLTASEV
LDLASAEPVRVRFGFSDSDLDTIREWLGRSGIRWGLGARERSRFNMGAFPQGTFAAGLDR
IALGAVADEADGQWLGTALPLDAVESTAIDLFGRLTEFINRLEHVLSQMDSTATPARWVT
ILSDGVRALTAAIPGEEWTTTAALRTIGRVLDDGPTADSAPRSTVCELRPADVRDMMAGL
LASRAGRSNFRTGELTVCSMVPMRSVPHRVIILLGIDADTFPRATRIDGDDVCGTRPLVG
ERHPRDEDRQAFLDAIWAATETLHVYVTGADPITGRPVPPAVVVSELVDALDTLTGGGTV
VRRHTLHAFDSRNFAAGAMRGITGPFSHDTALLAGALAQRSTSGEVAAPVPARCVFPMPD
DEPTEHDTTGRPDIDLGELIAFHTSPIEAFFRQRLQIWIPQEELAHADELDIDLGGLDEW
GVGDRLLRRMLGGADMMDCQAAELRRGTLPPRMFGTRELREIAAEVNQVYDAVSPLRQEA
LGDGRPRTADVLVQLTDGRRIHGTIADVHGESIITATFSKLRAKQRLAAWIGLLALSATR
PAGPDTASSVASAVVVGRSTRGSGGVALSRFAVPEDPVAVLEELVALRDLGLRKILPVTA
ELAADFVETQRRSKSKVALSAARRNFERGYGASADRFVRMAFGGDVSAAVEFDDLLVDRI
GDIGEIDWTALGLEPDPDLDEDADAVFCALAHMLWMPLLTHEVNA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgtccatcgcgccgaacgcaccgatgcgctggccggcgtcctggccggggtt
ctcgccgaacctctcacgccgtccggcggcggacaggcggatcctttcgcgccggagatc
gtgagcgtgcccgcccgcggcgtggagcgatggctacagcagcacctggctcgcacgctt
ggtaccgggtctgcgggcggccacgacgggatctcggcgaacatcgacttcccatcgccg
gccgacctggcggaccggatcgtggcagcggtcaattcgggtgtcccgttcagcgcgacc
ggtgacggccgtaccgacgacccgtggcgaccggggcgactcgtgtggccggtgctgagg
gttctcgacgagagcctcgatgacgccgcgttccgggtgatcgcgcggcatgtgggtgtg
caacccgccgggccgaaccggcccgacagtaccgttgacgacgccgaatatcgccgtggc
cgtaggtattccacggcacgtcagatcgcggacctgttcacccggtacgcgacagcccgg
ccggccatgctcgccgggtggatcaccggccccgtggacggggtggacctcgacggcacg
ggtgccgctgtcgccgacggaatggcctggcagcccggattcttccgcgcggtgcacgac
gagatcggggtgccgcatcccgctgaatacctcggcacggtctgcgaccggctgcgcgcc
gacccggaggccgggagcctgccggcccggctgtcggtgttcgggcccacgcgcatctct
gagtcgttccggcagctcctcaccgccaccgccgagcaccatgacgttcacctgtatctg
ccgcatccgagtccggtgctgtggtcggcgggtccctctgcgttgcgggcggacggtgca
ccgcgcagacccgcgccgcccgtgacgcgaaaacagtgggagcggccgatgccacggcat
ccgttgctggcgagtctggcacgggacgtgggggagttgcaggaacgtctcaccgggatc
gccgaccgcgatctgcaccacgacatcgatggcgccgaatccatgtcgttgctccacgca
ctgcaggcagggctgcgcgatgatcacctgctcccgggcggaaccgtcgacgacggcagc
gtcgaggtgcattcctgtcatggtccgcaccggcaggtggaggtgctgcgggaccggctg
ctgcatctgttttccgccgacccgaccctgcagccgcgtgatgtgctgatcatgtgcccg
gacgtggaaacgttcagtccactgatccgcggcgcgttcggccagaccggtctcgaccat
cccgcgttctcgttgcgggtacggatggctgatcgtgttgtgcggcaactcaatccggtg
ctagaggtgatcgcgcatgtcgtggggctggccgccggcaggctcaccgcgagtgaggtc
ctcgacctggcgtccgccgaacccgtccgggtgcgtttcggtttctccgactccgacctc
gacaccatccgggaatggctgggccgcagcggtatccgctgggggcttggggcgcgtgaa
cgtagccgtttcaacatgggggcgttcccgcagggcaccttcgccgcgggactcgaccgg
atcgcgctcggcgccgtcgccgacgaggccgacgggcaatggctgggcaccgcgctgccc
ctcgacgccgtcgagagcaccgccatcgacctgttcggccgcttgaccgagttcatcaac
cggctcgaacacgtgctgtcgcagatggactcgaccgccacccccgcgcgctgggtaacg
atcctgagcgacggcgtgcgggcgctgaccgccgcgatcccgggtgaggagtggaccacc
accgcggcgctgcgcaccatcggcagggttctcgacgacggacccacagccgacagcgcg
ccgcggtccacggtgtgtgagctgcggccggccgatgtgcgcgacatgatggccgggctg
ctggcgagccgggccggccgctccaacttccgcaccggcgaactcaccgtgtgctcgatg
gtgccgatgcggtcggtgccgcaccgggtgatcatcctgctcggcatcgacgccgacacc
ttcccgcgcgccacccgcatcgacggcgacgacgtgtgcggaacccgaccgctggtcggt
gaacgccatccgcgcgacgaggaccggcaggcctttctcgacgccatctgggcggccacc
gaaaccctgcacgtgtacgtcaccggcgccgacccgatcaccggccgcccggtgccgccg
gccgtcgtcgtcagcgaattggtcgacgccctcgacactctcaccggcggcggcaccgtg
gtgcgacggcacactctgcacgccttcgactcccgcaatttcgccgccggtgcgatgcgc
gggatcaccggacctttcagccacgacacggcgctccttgccggcgcgctggcccagcga
tccacgagcggtgaggtggcggcgccggtgcccgcgcgctgtgtgtttccgatgcccgac
gacgaacccaccgagcacgacacgaccgggcgccccgacatcgacctgggcgagttgatc
gccttccacacctcaccgatcgaggcgttcttccggcagcggctgcagatctggataccg
caggaggaactcgcccacgcggacgagctggacatcgacctcggcggactcgacgagtgg
ggtgtgggcgacaggctgttgcggcggatgctcggcggtgcggacatgatggactgccag
gcggcggagctgcgccggggtacgttgccgcccaggatgttcggaacgcgtgaactccgg
gagatcgcggccgaggtgaaccaggtgtatgacgcggtatccccgttgcgtcaggaggcg
ctcggcgacggcaggccgcggacggcagatgtgctggtccaactcacggacggccgccgc
atccacggcacgatcgccgacgtgcacggcgaaagcatcatcaccgcgacgttttccaaa
ctccgggccaaacagcggctggctgcgtggatcggtctgctcgctctgtcggcgacgcgg
ccggcgggcccggacaccgcgtcgtccgtcgcctccgctgtggtcgtgggccgcagcacc
cgcggaagcggtggtgttgcgctgtcgcggttcgctgttcccgaggacccggtggctgtc
ctggaagagcttgtcgcactacgtgacctgggtttacggaagatccttccggtgaccgcc
gagcttgccgccgactttgtggagacgcagcgccgatccaagagcaaggtggcgttgtcg
gcggcgcggcgcaatttcgagcgcggctatggtgcctccgccgaccgtttcgtgcggatg
gcgttcggcggggatgtgtcggcggccgtcgagttcgacgacctgctcgtcgaccgcatc
ggtgatatcggtgagatcgattggaccgcgctgggtctggaaccggatccggacttggac
gaggacgccgacgccgtgttctgcgcgctggcccacatgctgtggatgccactgctgacc
cacgaggtgaacgcatga
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