Gordonia amarae: GII34_14200
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Entry
GII34_14200 CDS
T07320
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gam
Gordonia amarae
Pathway
gam03030
DNA replication
gam03430
Mismatch repair
gam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GII34_14200 (dnaE)
03430 Mismatch repair
GII34_14200 (dnaE)
03440 Homologous recombination
GII34_14200 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gam03032
]
GII34_14200 (dnaE)
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_14200 (dnaE)
Enzymes [BR:
gam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GII34_14200 (dnaE)
DNA replication proteins [BR:
gam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GII34_14200 (dnaE)
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GII34_14200 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QHN22525
LinkDB
All DBs
Position
complement(3206902..3210447)
Genome browser
AA seq
1181 aa
AA seq
DB search
MTDSFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMSAIGMTDHGNMFGASEFYNSAVKHD
IKPIIGIEAYIAPGSRFDTKRVLWGTRDQKSDDVSGSGAYTHMTMVAANATGLRNLFQLS
SLASIEGQLGKWARMDEDLIAAHAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEI
FGPENFYLELMEHGIEIESRVREGLLDVGRKLGIKPLATNDCHYVTREHASSHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRELWDAQVPGACDSTLEIGERVESYKDVFTHRDR
MPIFPVPDGYTQESWLSREVFAGLEERRFAGRTVPEEYRTRAEYELRVINQMGFPAYFLV
VGDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDID
IDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADKITK
ALPPPIMAKDIPVWGITNPEHERFSEATEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
IKLNRGIDLDLDKLALEDDKTYELLARGDTLGVFQLDGAAMRDLLKLMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQDIKPIHPELEEPLKDILAETFGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYDGFADGMRGNGFSQAAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANFPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQRNFAAVGADIRFGLAAIRNVGTGVVSSILSAREEKGKYTSFSDYLNKIDVVACNKK
VTESLVKAGAFDSLNHPRKGLFLVHSDAIESVLGTKKAEAVGQFDLFGDAGGADDSMADV
FAVKVPDEEWDTKHKLALEREMLGLYVSGHPLAGVEHAIAQHTDTSITSLLEGNISDGAQ
ITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAYQTYGLDIVADNIVLIKAR
VNMRDDSMMISANDLAVPDLASAGATKPVSLTLPARMCTPDRVQQLKQVLTRHPGMADVH
VTLVADQRQTLLKLTESLRVNPTSALMGDLKALLGPSCLTS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgattccttcgttcacctgcataatcacaccgaatactcgatgctcgacggtgcg
gcgaaggtgtcgccgttgttcgccgaggccaagcggttggggatgtcggcgatcgggatg
accgaccacggcaacatgttcggggcgtcggagttctacaactcggcggtcaagcacgac
atcaagccgatcatcgggatcgaggcgtacatcgcgccgggttcgcggttcgacaccaag
cgtgtgctgtggggtacccgtgatcagaagtccgatgatgtgtcgggttcgggtgcgtac
acccatatgacgatggtcgcggcgaacgcgacgggtctgcggaatctgttccagctgtcc
tcgctcgcctcgatcgagggtcagttgggtaagtgggcgcggatggatgaggatctgatc
gccgcgcacgccgaaggcatcatcgcgacgacgggctgcccgtcgggggaggtgcagacc
cggctgcgcctgggccatgatcgtgaggctctggaggcggcggcgaagtggcaggagatc
ttcgggccggagaatttctatctggagttgatggagcacgggatcgagatcgaatcccgg
gtccgcgagggcctgttggatgtgggtcgcaagctgggcatcaaaccgctggcgaccaat
gactgtcactatgtgacgcgtgagcacgcttcctcgcatgaggctctgttgtgtgtgcag
accggcaagacgttgtcggatccgacgcggttcaagttcgacggtgacggctactacctc
aagtccgcggccgagatgcgggagctgtgggatgcgcaggtgccgggcgcgtgtgattcg
acgttggagatcggggagcgcgtcgagtcgtacaaggacgtgttcacccatcgggaccgg
atgccgatcttcccggtgccggacggctatacgcaggagtcgtggctcagtcgcgaggtg
ttcgccggtctggaggagcgcaggttcgccgggcggacggttcccgaggagtaccgtacg
cgggctgagtacgagttgcgggtcatcaatcagatgggtttccctgcctacttcctggtg
gtcggtgacctgatcaggcatgcgctggaggtggggatccgggtggggccggggcgtggt
tcggctgccggttcgctggtggcgtgggcgttgggtatcaccaatatcgacccgatcccg
cacggtctgctgttcgagcggttcctgaatcctgagcgtgtgtcgatgcccgatatcgat
atcgacttcgacgatcgccgccgcggtgagatggtgcggtacgcgaccgatcggtggggg
tcggacaaggtcgcccaggtcatcaccttcggcacgatcaagaccaaggccgcgatcaag
gattcggcgcgcgtccagttcgggcagccgggtttcgccatcgccgacaagatcaccaag
gcgttgccgccgccgatcatggccaaggacattccggtgtggggtatcaccaaccccgag
catgagcggttctccgaggccaccgaggtgcgcacgctcatcgagaccgacccggatgtg
aagaagatctacgacaccgctttgggtcttgagggtctgatccgtaacgccggtgtgcat
gcgtgtgcggtgatcatgtcctcggagccgctgaccgacgcgattccggtgtggaagcgt
gcccaggacggggcgatcatcaccggctgggattacccgtcgtgtgaggctatcggcctg
ttgaagatggacttcctgggtctgcggaacctgacggtgatcggtgacgcgctggagaac
atcaaactcaaccgcggcatcgacctcgacctcgacaaactcgctctcgaagacgacaaa
acctacgaactcctcgcccgcggcgacaccctgggcgtgttccagctcgacggcgcggcc
atgcgtgacctgctgaaactgatgcagcccaccggcttcgaggacatcgtggccgtcctg
gcgctgtaccggcccggcccgatgggtgtgaacgcgcacaccgactacgccaaacgcaag
aacggcctgcaggacatcaagccgatccacccggaactcgaagagccactgaaggacatc
ctcgcggaaaccttcggcctgatcgtctaccaagagcagatcatgcagatcgcgcagaag
gtcgcgggatactcgctcggacaggccgacctgctgcgccgcgcgatgggcaagaagaag
aaggagatcctcgacgaggcctacgacggtttcgccgacggcatgcgtggcaacggattc
tcccaggccgcgatcaccgccctgtgggataccgtgctcccgttcgccggctacgcgttc
aacaagtcgcacgccgccggctacggtctggtctcgttctggaccgcctacctcaaggcc
aactttccggccgaatacatggccggtctgctcacctcggtcggcgacgacaaggacaag
gccgccatctatctcgccgactgccgcaaactcggcatcaccgtgctgccgcccgacgtc
aacgaatcccagcgcaacttcgccgccgtcggcgccgacatccgcttcggtctcgccgcc
atccgcaacgtcggcaccggtgtcgtctcgtcgatcctgtccgcgcgtgaggaaaagggg
aagtacaccagcttctcggactacctcaacaagatcgacgtggtggcctgcaacaagaag
gtcaccgaatccctggtcaaggcaggcgctttcgactcactgaaccatccgcgcaagggc
ctgttcctggtacacagcgacgccatcgaatcggtgctcggcaccaagaaggccgaagcc
gtcggccagttcgacctgttcggtgacgccggcggtgccgacgattcgatggccgacgtg
ttcgccgtgaaggtgcccgacgaggaatgggacaccaaacacaaactggccctcgaacgg
gagatgctcggcctctacgtgtccgggcatccgctcgccggtgtcgagcacgccatcgcc
cagcacaccgacacctccatcacctcactgctcgagggcaacatctccgatggtgcgcag
atcaccatcggcggcatcatctcctcggtcacccgccgggtgaacaagaagggtgagccg
tgggcggctgtcacccttgaggacatggtcggtggtgtggaggtgtatttcttcccgcgc
gcctaccagacgtacgggctcgacatcgtcgccgacaacatcgtgctcatcaaggcccgc
gtcaacatgcgcgacgacagcatgatgatcagcgccaacgacctcgcggtgcccgacctc
gcgtcggccggcgccaccaaaccggtcagcctgacgctgcctgcccggatgtgcaccccc
gaccgggtgcagcagctcaagcaggtgctcacccggcaccccggcatggctgatgtgcac
gtcactcttgtcgctgatcagcgccagacgctgctgaagctgaccgagagcctgcgggtg
aatcccacctcggcgctgatgggcgatctcaaggcgctgctgggcccgagctgcctcacc
tcgtag
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