Gordonia amarae: GII34_17030
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Entry
GII34_17030 CDS
T07320
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gam
Gordonia amarae
Pathway
gam03420
Nucleotide excision repair
gam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GII34_17030
03430 Mismatch repair
GII34_17030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gam03400
]
GII34_17030
Enzymes [BR:
gam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GII34_17030
DNA repair and recombination proteins [BR:
gam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GII34_17030
MMR (mismatch excision repair)
Other MMR factors
GII34_17030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QHN22996
LinkDB
All DBs
Position
complement(3821496..3823604)
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AA seq
702 aa
AA seq
DB search
MGDVSDILDGLDPEQRAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLTSSGQVNPGQVLA
VTFTARAAGEMRGRLRSLGVGGAGSVQAQTFHAAALRQLRYFWPQVFGELRWELLDNKFQ
VVSRAANRVGLSTSKESVRDLAGEIEWAKASLIGPSGYAEHVAEIGRETPQPADNVAQVF
ALYERLKVGENGDRLFDFDDLLIYTTEILRTERAVAEEFRERYRCFVVDEYQDVTPVQQG
LLDEWLGARDDLTVVGDANQTIYSFTGATPSYLLDFTRRFPDATLVRLERDYRSTPQVVG
LANRVIGQARGRIAGTRLRLLGQRPAGPEPVFAEYPDGPAEAAAVATRVAALIEQGVAAS
EIAILYRINAQSENHEQALTEAGIPYQVRGGESFYTRTEVRQAMRGLTEAARRDDLPADA
DVVTLTRAVLVPLGLSDEEPAGAQARARWESLRALAALVDDMASANPELTLRNVVAELNS
RAESRHPPTVQGVTLSSLHAAKGLEWDAVFLVGLTDGSLPISQAIDAGFDAIEEERRLFY
VGVTRAREHLQVSWGLARNEGGRPRRRSRFLTDDVVPDGSPASRIAEPGPVRRGPSCRIC
GTRLVGSAAALLGRCERCPADLDEDLLAELKQWRAEVADAKKVPGFTVLSDKTLTAIAEQ
LPVTDRDLLRIRGIGQKKLTDYGEDIVAMVTSAGLSKTAGQK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgggggacgtgtccgacatcctcgatggtctcgatcccgagcagcgtgccgccgtcctc
gccccccgcggaccggtgtgcgtgctggccggcgcgggcaccggcaagacccggaccatc
acccggcgcatcgcgcacctcacctcgtccggtcaggtcaacccgggacaggttctcgcg
gtcacgttcaccgcgcgggcggcgggtgagatgcgtgggcggctgcggtcgctcggcgtc
ggcggggcgggttcggtgcaggcacagaccttccatgccgccgcgctgcggcaactgcgc
tacttctggccgcaggtgttcggtgagctgcgctgggaactgctcgacaacaagttccag
gtggtctcgcgcgcggccaaccgggtgggcctgtccacgtccaaggagtcggtgcgcgac
ctcgccggtgagatcgaatgggccaaggcgtcgctgatcggtccgtccggttacgccgag
cacgttgccgagatcggccgtgagacaccgcaacccgccgacaacgtggcccaggtcttt
gccctgtacgaacgtctgaaggtcggcgagaacggcgaccggctgttcgatttcgacgat
ctgctgatctacaccaccgagatcctgcgcactgaacgcgcggtggccgaggagttccgc
gaacgctaccgctgtttcgtcgttgacgagtatcaggacgtcaccccggtgcagcagggg
ctgctcgacgaatggctcggcgcccgcgacgacctgacggtggtgggcgacgccaaccag
accatctactcgttcaccggcgccaccccgtcatatctgctcgacttcacccgccggttc
cccgacgccacgctggtgcgcctcgaacgtgactaccgctcgacgccgcaggttgtcggc
ctcgccaaccgggtgatcgggcaggcccgcggccgcatcgccggaacccggctgcggctg
ctcggtcagcggcccgccggaccggaaccggtgttcgccgaatatcccgacggtccggcg
gaggcggctgccgtggccacccgggtcgccgcgctgatcgagcagggcgtggcggcgtcg
gagatcgcgatcctgtaccggatcaacgcgcagtcggagaaccacgagcaggccctcacc
gaggccggtatcccgtaccaggtgcgcgggggcgaatcgttctacacccgcaccgaggtg
cggcaggcgatgcgcggactcaccgaggcggcccgccgcgacgatctgcccgccgacgcc
gacgtcgtgaccctcacccgggccgtgctggtgccgctcgggctgtcggacgaggagccc
gcgggtgcgcaggcgcgggcacgctgggagtcgctgcgggcgctcgccgcactcgttgac
gacatggcctcggccaacccggagctgaccctgcgcaatgtggtggccgaactgaactca
cgcgccgagtcccggcacccgccgacggtgcagggcgtcaccctgtcgtcgctgcacgcc
gcgaagggcctggaatgggatgcggtgttcctcgtcgggctcaccgacgggtccctgccg
atctcgcaggccattgacgccggcttcgacgccatcgaggaggaacggcgcctgttctac
gtcggcgtgacccgggcccgggaacatctgcaggtgtcatggggtctggcccgcaacgag
ggcggccgcccccggcgccgctcgcgcttcctcaccgacgacgtggtgcctgacggttcg
cccgcctcccggatcgccgaacccggtccggtgcgccgcggcccgtcgtgccggatctgc
ggcacccgcctggtcggatcggcggcggcgctgctcggccggtgcgaacgctgcccggcc
gacctcgacgaggacctgctcgccgaactcaaacagtggcgcgccgaggtggccgacgcc
aagaaggtgccgggcttcaccgtcctcagcgacaagacgctgaccgcgatcgccgagcaa
ctcccggtcaccgaccgtgacctgctccgtatccgcggcatcggccagaagaagctcacc
gactacggcgaggacatcgtcgcgatggtcacgagtgcgggcctcagcaaaaccgcaggt
caaaaatag
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