Grus americana (Whooping crane): 129195322
Help
Entry
129195322 CDS
T11359
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
game
Grus americana (Whooping crane)
Pathway
game03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
game00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129195322 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
game03041
]
129195322 (DDX42)
Enzymes [BR:
game01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129195322 (DDX42)
Spliceosome [BR:
game03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129195322 (DDX42)
Complex B
129195322 (DDX42)
Complex C
U2 SnRNP specific factors
129195322 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
129195322
NCBI-ProteinID:
XP_054657167
LinkDB
All DBs
Position
22:748236..767706
Genome browser
AA seq
949 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVHGFNNTNASTNNREGSSSSSTSVATAGGGGGSGGVGGSGGGGIVRERYNDNRNS
RHNEVPRRGEGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHGESRHFADVGSGNRN
NGDSRNSNEGRNNESRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggccctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaaaaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtcgaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctatatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccatttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagctttgctcattttgggttc
gatgagcaacttatgcatcaaattaggaagtctgagtatacccagcccactcctatacaa
tgtcagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agcggaaaaacagcagccttcatctggccaatgttgattcacatcatggatcagaaggag
cttgaaccaggggatgggcccattgcggtgatcgtgtgcccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataacctgcgctctgtagctgta
tacggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggccgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgagtatcag
gtcagatcaattgcaagccatgtacgtccagacagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggctcgagatattctgatcgacccgattcgagttgtg
cagggagacattggagaggcaaatgaagacgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagc
gttctcctgtttgtcaccaagaaggcaaatgcagaagagctggccaataaccttaagcag
gaggatcataatctagggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccgatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtgatcaattatgatgtggctcgggacatagat
acacacacccatagaataggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgctggtgatcttgtcagaaatctggaaggcgcc
aatcaacacgtttccaaagagctgttggatctagcaatgcagaatccatggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagtgtgatg
agtaactatgaggcatacaagccatccactggggcaatgggagacagacttacggcgatg
aaagcagcatttcagtcccagtataagagccactttgttgctgcaagcttaaataatcaa
aagactggtagctccgctgctggtgctagtggctggaccagtgctgggagcttgaactca
gtaccgacgagttcagcacagcaaaatgctgcaaatcctgacagcccaattgcagccgcc
gcagcagcaaagggtgttccaggtttcaccagcacggggaatttgagtagcgttcccacc
tttccaagtgttggagtacatggcttcaacaacacaaatgccagcaccaacaatcgagaa
ggcagcagcagcagcagcaccagtgttgccactgctggtggcggtggtggcagcggtggt
gttggtggcagtggtggtggcggcattgtcagagaacgatacaacgacaaccggaacagt
cgccacaatgaggtcccgcgccgtggagagggcggtggtcgctacaatgatgtgcaacgc
cacggagaaggaggcggtcgccacagtgacgcttaccgccacggagagggccgacacggc
gacaaccatcgccacggtgaaagccggcactttgctgatgtgggcagtggcaatcgcaat
aatggcgacagcaggaatagcaacgaaggtaggaacaacgagagcaggaatggtgagaac
aggaaggatgccaacagccgagacaacaagacagatggttttgctgtcccagagccccca
aaacgtaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
