Grus americana (Whooping crane): 129197285
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Entry
129197285 CDS
T11359
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
game Grus americana (Whooping crane)
Brite
KEGG Orthology (KO) [BR:
game00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
game03016
]
129197285 (RTCB)
Enzymes [BR:
game01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129197285 (RTCB)
Transfer RNA biogenesis [BR:
game03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129197285 (RTCB)
Prokaryotic type
tRNA splicing ligases
129197285 (RTCB)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129197285
NCBI-ProteinID:
XP_054661557
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Position
1:60755050..60766642
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AA seq
505 aa
AA seq
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MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgtttgaggagctgcgcaacgcctgccgcggcggaggtgcaggt
ggttttttgcctgctatgaaacagattgggaatgtggctgcattacctggcatcgttcat
agatcaataggccttccagatgtccattctggctatgggtttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggatttgatatc
aactgtggtgtccgcttactacgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgagtgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtttcctcaagagcaaagaagaggggcctgcctcagctgggg
accctgggagccggaaatcattacgccgagatccaggttgtggatgacatttacaacgaa
tatgctgccaggaagatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggcctgggccaccaggttgccacagatgcattggtggctatggaaaaagct
atgaaaagggacaaaatcatagtgaatgatcgccagctggcttgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgatatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggacggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcatcatcctcttatcgctgtcgattatcaactgactggacagcccgttttg
atcggtgggactatgggcacctgtagctacgttcttactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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