Grus americana (Whooping crane): 129198013
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Entry
129198013 CDS
T11359
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
game Grus americana (Whooping crane)
Pathway
game04510
Focal adhesion
game04512
ECM-receptor interaction
game04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
game00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129198013 (COL2A1)
04518 Integrin signaling
129198013 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129198013 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
game00536
]
129198013 (COL2A1)
Glycosaminoglycan binding proteins [BR:
game00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129198013 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
129198013
NCBI-ProteinID:
XP_054662911
LinkDB
All DBs
Position
31:complement(2195467..2213580)
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AA seq
1486 aa
AA seq
DB search
MPGRRPLRLAAALAILFLAVVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGWQPGPKGQKGEPGDIKDVVGPRGP
PGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGP
RGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGTKGE
AGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGP
AGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGP
KGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL
PGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGA
DGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGE
DGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGP
VGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGP
TGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGL
PGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGP
PGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGSLRQHDVEVDATLKS
LNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGE
TCVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLL
STEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKH
TGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccatcctcttcctcgccgtc
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtatggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggattgtcccagccccgaaatc
cccttcggagagtgctgccccatatgtcccactgaccaacccagcggttggcaacctggc
cccaagggacagaagggcgaacctggtgacattaaagatgttgtaggaccccgagggcct
ccgggaccacagggcccggcaggcgagcagggacaacgaggggaccgcggtgagaaaggg
gagaagggtgctcccggcccccgcggcagggatggagaacccggcacccctggaaatccc
ggcccccccggcccccccggacctcctggcccccctggccttggtggaaacttcgcggcg
cagatggcaggcggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcaggga
cccatgggccccatgggaccccgtggcccccccggaccttccggcgctcccggtcctcaa
ggatttcaaggcaaccccggtgagcccggcgagcccggcgctgctggtccgatgggtccc
cggggaccaccgggacctcctgggaaacccggtgacgatggcgagaccggcaaacccggc
aaatccggcgagcgtggcccccccggcccccagggtgctcgtggctttcccgggacaccc
ggtctccccggtgtgaaaggccaccggggttaccccggcttggacggcaccaagggagag
gcaggggctcccggagccaagggtgaatccggctcacctggcgagaacggctcccccggc
cccatgggtccccgcgggctgcccggagagagaggacgtcccggcccctccggcgctgcg
ggtgctcgtggcaacgacggtctccccggcccggctggaccccctggacctgttggccca
gccggagcccccggcttccctggcgcccccggctcaaagggtgaagctggtcccaccggc
gcacgaggtcccgagggtgcccagggcccccgcggtgaatctggcacccccggctctcct
ggccccgccggcgcccccggtaacccagggaccgacggcatccccggcgcgaagggctcg
gcgggtgccccgggcatcgccggcgctccaggcttccccggcccccgcggcccgcccggc
ccccagggagccaccggcccgctgggccccaagggacagacgggagaacccggcatcgcg
ggcttcaaaggcgaacagggaccgaagggcgagacgggacccgcaggaccccaaggtgcc
cccgggccggctggtgaagaaggcaagagaggagcccgcggtgaacccggtgctgccggc
cccgtgggaccacctggagagaggggtgctcctggcaatcgcggcttccccgggcaggat
gggctggctggacccaagggtgctccgggcgagcgtggccccgccggcctcgcgggtccc
aagggagccaccggcgaccccgggcgccccggagagcccggtctgcccggagccaggggt
ctcaccggccgccccggcgacgctggtcctcaaggcaaagtcggcccgaccggtgctcct
ggcgaggacggccgccccggcccccccggcccgcagggtgctcgtggccagcctggcgtg
atgggtttccccggtcccaaaggtgctaacggcgagcctggaaaagccggtgagaaagga
ctccccggcgccccggggctgcggggtcttcctggcaaggacggtgagacgggagctgcc
ggccccccaggacctgccggtcccgcaggcgagaggggagaacaaggagcccccggtccc
tctggcttccaggggctgcccgggccaccaggcccccccggagagagcggcaaacccgga
gatcagggtgttcccggagaagctggtgcccccggtctcgtcggtcccagaggtgaacgc
ggcttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgcgggctc
cctggcacgccgggcaccgacggacccaagggtgcaaccggaccagccggccccaatggt
gcccagggtcccccggggctgcagggaatgcccggtgagagaggagcagccggcatcgcc
ggtcccaagggagaccgaggagacgtcggagagaagggccctgagggagcccccggaaag
gacggcgcacgcggtctgacgggtcccatcggtccccccggccccgctggccccaacggc
gagaagggtgaatccggccctcctggtccatccggcgctgctggtgcccgcggtgccccc
ggcgagcgcggtgagcccggtgcccccggtcccgccggatttgctggtcccccgggtgcc
gacgggcaacccggtgccaaaggcgaacaaggagagcccgggcagaagggtgatgctggt
gctcccggtccccaaggtccctccggcgcacctggcccacagggtccaactggtgtaact
ggtcccaaaggagcccggggtgctcagggcccccctggagccactggattccccggcgct
gccggccgtgtgggaccacccggccctaatggtaacccaggcccccccggtccccccggc
tctgctggcaaagatggtcccaagggtgctcgtggcgatgccggtcccccgggccgtgcc
ggtgaccccggtctccaaggccctgccggtccccctggtgagaaaggcgaacccggcgag
gatggccccgcgggtcctgacggtccccccggtccccaaggtttggcaggacagcgtggc
atcgtcggtcttcctggacagcgtggtgagaggggcttccccgggctgccggggccatcg
ggcgaacctgggaaacaaggagcacccggctctgctggtgaccgtggcccccccggcccc
gtgggtccccccggtctgacgggtcctgctggcgaacctggacgcgagggtaaccctggc
tctgacggacccccgggcagagacggcgcagccggcgtgaagggtgatcgcggcgagacc
ggtcccgtaggtgcccccggcgctcccggtgcccccggcgctcccggacccgtcggtccc
accggcaaacaaggagacagaggcgaggcgggtgcacaaggtcccatgggtccctccggt
cctgctggcgctcgaggcatgccgggtccccaagggccccgcggtgacaagggtgagacg
ggagaggctggagagagagggctgaagggccaccgcggcttcaccggtctgcagggtctg
cccggcccacccggtccttctggagaccagggtgctgctggtcccgcgggtccctccggt
cccaggggtccccccggccccgtcggcccctctggcaaagacggctccaacggtatgccc
ggccccatcggtccccccggcccccgcggacgaagtggcgaaccaggtcctgcgggtcct
cctggaaacccaggtccccctggtcctcccggccccccgggtaccggcatcgacatgtca
gctttcgctggcctgggtcagacagagaagggtcccgaccccatccgctacatgcgggca
gacgaggccgccggcagcctgcggcagcacgacgtcgaggtggacgccacactcaagtcc
ctcaacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccggccagg
acctgtcgcgacatcaagctttgccatcccgagtggaagagcggagactactggatcgac
ccgaaccagggctgcactttggacgccatcaaagttttctgcaacatggagacgggagag
acctgcgtctaccccaaccccagcagcatccccaagaagaactggtggaccagcaagacc
aaagacaagaagcacgtctggtttgcagagaccattaacggcggtttccacttcagctac
ggcgatgaagacctggctcccaacaccgccaacatccagatgaccttcctccgcctcctg
tctaccgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggac
gaggagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggagatc
agagccgagggcaacagcaggttcacgtacagcgtcttggaggacggttgcacgaaacac
actggcaaatggggcaagacagtcattgagtaccgatcgcagaagacctcgcgcctgccc
attgtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggatatt
ggcccagtctgcttcttgtaa
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