Grus americana (Whooping crane): 129199068
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Entry
129199068 CDS
T11359
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
game Grus americana (Whooping crane)
Pathway
game03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
game00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129199068 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
game03019
]
129199068 (MTREX)
03041 Spliceosome [BR:
game03041
]
129199068 (MTREX)
03009 Ribosome biogenesis [BR:
game03009
]
129199068 (MTREX)
03016 Transfer RNA biogenesis [BR:
game03016
]
129199068 (MTREX)
Enzymes [BR:
game01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129199068 (MTREX)
Messenger RNA biogenesis [BR:
game03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129199068 (MTREX)
Spliceosome [BR:
game03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129199068 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
129199068 (MTREX)
Ribosome biogenesis [BR:
game03009
]
Eukaryotic type
Pre-60S particles
Helicases
129199068 (MTREX)
Transfer RNA biogenesis [BR:
game03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129199068 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
129199068
NCBI-ProteinID:
XP_054664779
LinkDB
All DBs
Position
Z:20220344..20270668
Genome browser
AA seq
1039 aa
AA seq
DB search
MGGVPGLCPECSVTSAAHRRRDFFSENAYIKGTNFKLVVCLCCRKRLEEKSSVTVTGKPK
REVEVNSTEGAVLGKKPKLEDVLSEDVNLTDLMPQVKVQTVETVEGCTHEVALPADEDFT
DLKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ
RVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVM
REVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQP
CHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRDDNFNTAMQVLRDAGDLAKGDQKG
RKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEV
FNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATE
TFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKM
SPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPELVE
RVNNLEGQYNKIAIPNEENVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVK
NEGDDFGWGVVINFCKKSNVKPNSGDLDPLYIAEVLLHCSRESLKNSATESAKPARPNEK
GEMQVVPVLVHLISAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDM
GIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAIDIKAAKRELKKAR
TVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAE
QATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEMDEENYLNSFR
PNLMDVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKF
AEGITKIKRDIVFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagttcctgggttgtgccctgaatgcagtgtgaccagtgctgcccataggaga
cgtgatttcttttctgaaaatgcatacataaaagggacaaactttaaattagttgtctgt
ttatgttgcagaaaacgattggaggaaaaatcttcggtaactgtgacagggaagcctaaa
agggaagttgaggtcaatagtactgaaggtgcagttttgggaaagaagccaaaattggaa
gatgttttatcagaagatgttaatctgacagacctgatgcctcaagtaaaggtgcaaact
gtggaaactgttgaaggttgtacacatgaggttgcgcttccagcagatgaagactttaca
gacctaaagccaagaactggaaaagctgcaaaagaatatccatttattcttgatgcattt
cagagagaagctattctttgtgtagataataaccagtctgtgttagtgtcggctcataca
tcagctggtaaaactgtttgtgcagagtatgcaattgccctggctttgagggagaaacag
cgtgtgatatttacaagtccaattaaagctttgagtaatcagaaataccgtgagatgtat
gaagaatttcaggatgttggcttgatgactggggatgtcaccattaatcctacagcttct
tgtctcgtaatgacaacagagattttgagaagtatgctctacagaggttctgaggttatg
cgagaagttgcatgggttatttttgatgaaatccactacatgagagattcagaacgtggt
gtggtttgggaagagacaattattttgcttcctgacaatgttcactatgtcttcctttct
gcaactattccaaatgcccgtcagtttgctgaatggatctgccaccttcacaaacagcct
tgccatgtgatttacacagactatcgacccactccactgcagcattatatattcccagca
ggaggagatgggctccatctggttgttgatgaaaatggagatttcagagatgataatttt
aatacagccatgcaagtgcttagagatgcaggagacttagcaaaaggggaccagaaaggc
aggaaaggaggaacgaaaggtccctcaaatgtttttaagattgtgaagatgatcatggaa
aggaatttccaacctgtgattattttcagcttcagtaagaaagactgtgaagcctatgca
cttcaaatgacaaagttagatttcaatacagatgaagaaaaaaagatggttgaagaagtg
ttcaataatgccattgattgtctgtcagatgaagacaaaaagcttcctcaggttgaacat
gtacttcctcttctgaagcgaggaattggtatccatcatggcggtctgcttcctatctta
aaagaaaccatagaaattcttttctctgagggcctaataaaggctttattcgcaacagag
acttttgcaatgggaattaatatgccagccaggactgtgttatttacaagtgcaagcaaa
tttgatggaaaagatttccgatggatctcctcaggtgaatacattcaaatgtcaggtcgt
gcaggacgccgaggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatg
agtccaacaattggcaagcagcttttgaagggttcagctgatcctttaaacagtgcattc
cacctgacgtacaacatggtattgaacttgcttcgagtagaggaaattaaccctgaatac
atgttagaaaaatccttctatcagtttcaacattacagagctattccagaattagtagaa
agagtgaataatttggaaggacaatacaacaaaatagcaattcccaatgaagaaaatgtg
gtgatatactacaaaatccgacagcagcttgcaaaactggctaaagagattgaagaatat
attcacaaaccaaaatattgcttgccctttctacagccaggaagactggtaaaggtgaag
aacgaaggtgatgactttggatggggagtggttattaatttctgtaagaaatcgaatgtt
aagccaaattctggtgacttggacccattatatatagctgaagtgctactgcactgcagc
agagagagtttgaaaaattctgctacggagtctgcaaagccagccagacctaatgagaaa
ggagagatgcaggttgttcctgttttggtacatcttatctcagctatcagcagtgtccga
ctttacataccaaaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctata
caggaagtacagaagcgatttcctgatggagtaccgttactagatcctattgatgacatg
ggcatcaaagatcaaggactgaaaaaagtaatccaaaaagtggaggcatttgagcatagg
atgtattcacatcctcttcacaatgatcccaacttggaaaccgtatataaactttgtgaa
aaaaaagcacagattgctatagatattaaagcagcaaagcgagaactgaaaaaagccaga
actgtcttacaaatggatgaactcaaatgccgcaagcgtgttttgagaagactggggttt
gccacgtcttcagatgttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgct
gatgaactactcctgacagaaatgatgttcaatggtctcttcaatgacttatccgcagaa
caggcaactgcacttctaagctgttttgtatttcaagagaactccagtgaaatgccaaaa
ttgacagagcagttggctggaccgcttcggcaaatgcaggagtgtgcaaaaagaatcgcg
aaggtgtcagcagaagcaaaactggaaatggatgaagaaaattacctaaattctttcaga
cccaacctaatggatgttgtgtatacatgggcaaatggagctaactttgctcacatctgc
aaaatgactgatgtctttgaaggtagtataatccgttgcatgagaaggctagaagaattg
cttcggcagatgtgccaggctgcaaaagccattggaaacacagagttggaaaataagttt
gcggaggggattacaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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