Grus americana (Whooping crane): 129200823
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Entry
129200823 CDS
T11359
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
game Grus americana (Whooping crane)
Brite
KEGG Orthology (KO) [BR:
game00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
game03009
]
129200823 (LTN1)
04121 Ubiquitin system [BR:
game04121
]
129200823 (LTN1)
Enzymes [BR:
game01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129200823 (LTN1)
Ribosome biogenesis [BR:
game03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129200823 (LTN1)
Ubiquitin system [BR:
game04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129200823 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
zf-ANAPC11
zf-rbx1
FANCL_C
RINGv
HEAT_GCN1
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
129200823
NCBI-ProteinID:
XP_054668047
LinkDB
All DBs
Position
1:complement(115478167..115510112)
Genome browser
AA seq
1770 aa
AA seq
DB search
MGGKNKQRTKGNLRPSSSGRAAELLAKERGTVPGFIGFGTSESDLGYVPAVQGAEEIDSL
VDADFRMVLRKLSKRDITTKLKAMQEFGTMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSSKQP
EALAFCKDEILNVLQDHLLKETPNTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMQSLEEKLMSLLSQNKFWKYGKHSIPQVRLAFFELASAFCQHLPELVKAEAARICPA
VLLSIDDSDAVVCPALWEAVLYTVATIEDCWSHVNAKKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPGIAEPKLEYFRTFFSSIIKGLSSERAIASPSESSAIITAFMECLRFAI
LQKIDKDDDRRQIHQMLIYDQLIPLTDAVLQEPRLQNGPLFYQIAETLSSWEAKAELSND
DGTDEVFQKLLSNFWDHLLKMCVLHVDTLDADEKSLFAISGMLEILQNPKTATNPKTIKS
LKIRFTDEDESERNTENGKLTEVRNSDSEIQADLQHRSLLRKEPLENLVCNLAELSIVYV
SEQKSEQHLKFLSALLNSFSSNRVFQVLLEQGNDASSAQAESQNEIKAHHESPSVQFLYM
NLITWLKEDWRKDTHFLVDILYSVLNCCNSNDERKIILDDLTKMDLKWVIFLQIIQKACS
STTKLSLVSDWLKGDTLGERLVMLADDLCHLGLKPTAASAESSSSERWTLLSLVLSQHIK
NESLIGETFVERIIDKLQAALSKAKDLSEAGNSEPSVSFICDVASSFFSSVKECLLMPSS
EDLLLTIFQLCAQRQDATHLTDLLVCKLKHTWMSGVNSLVRQLRSKQKQSTFLHKSALWV
KNQIQSSSLDVKSLQILISAVSDLLSKLMEADEQSGCLVGAYVEHVTPNETEWGKLHESL
STEWMHKPLLEGRLSMNCEPLGSCVKLRGTTKLPGHLCTSALLSKMVLLVLENDIVHGND
DAERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEKFSTLSNTASLQET
IFDRSEEHGRLWSLTMAKVICVENPVSCEKKQLFKTTEGFLPLTEGRLHTLQCLSPFLIE
EEKKELVFHCVAKLMTCTQKELSSTDGAFGCLSILNSCLNDRSIDCDHLLPGILKIIISW
KNDNEDSFLFSCNLKETSAQLLGFNIEMIRYLPLLLKYSTAPLADNEWDFIMCSMLAWLE
TTSENRSLYHVPLVQIFACVSCDLASALSAYFEAAAPETTENLPVNLISEWKEFFSEGIH
NLLLPLLAKVTGETKNASEGSFQNSVLTSLGEALTYISKDQLLNHKLPAKFVAGQKTNLP
DKLQTLLNTLSPLLLFRARPVQISVYHMLYKLMPELPKFDDEDLKSYGDEEEESALSPPA
ALMSVLATQELLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLR
VLYSQYLRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELHLDVKGTGVL
SSQIPHLACSVYRITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQT
STQLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPPNYPLGSITVESGKRVGVAVQQW
RNWMLQLSTYLTHQNGSIMEGLSLWKNNVDKCFEGVEDCMICFSVIHGSNYSLPKRTCRT
CRKKFHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgaaccaagggcaacctgcggccttctagcagtggccga
gctgcagagctcctcgccaaagaacgtggaacagtgcctgggtttattggctttggaaca
tctgagagtgatctaggatatgttcctgcagttcaaggagcagaggaaatagacagcctt
gtggatgctgattttcgaatggtgttgcgaaaactttctaaaagggatatcacaacaaaa
ttaaaagctatgcaagagtttgggacaatgtgcaaggaaagagaagcggaagttgttaaa
ggtgttcttccttactggccaagaatttattgtaaaatctcactagatcatgatcgccgt
gttcgagaagcaactcaacaatcttttgagcaactgattcttaaagtaaagaaacatttg
gctccttacttaaaaagtatcatgggatactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcaagcaaacaacct
gaagccttagcattctgtaaagatgaaattcttaatgtacttcaagatcaccttctgaaa
gaaacacctaatacactcagtgacccccaaactgtaccagaggaagaaagggaagccaaa
tttttccggattctgacctgttcattattagctttaaaaaagttgcttagcatgttgcca
aagaaagaaatgcagtcactggaggaaaagttaatgtcgcttctgtcccaaaacaaattc
tggaaatacggcaaacacagcataccacaggttcgcttagctttctttgagctggcttct
gctttttgccagcacttgcctgagctggtgaaagctgaagcagcaagaatttgtcctgct
gttcttctcagcattgatgacagcgatgcagtggtgtgtcccgctctttgggaagctgtg
ctttatactgtcgccactattgaggactgttggagtcatgtaaatgccaaaaagggagtt
ctgccaaagctatggacagtgcttcgagagggtggacgaggactagctactgttatatac
ccaaatctcttgccgttcattagcaaggtacctcctggcattgcagaaccaaagctggaa
tatttcagaacttttttcagctctataattaaagggttgtcaagtgagcgagcaatagcc
agcccttcagaaagttctgcaattataactgcatttatggaatgtctgcgctttgccata
ctacagaaaatagacaaagatgatgaccgaagacaaattcatcagatgcttatatatgac
cagctaattcctcttactgatgctgtacttcaggagcccaggttgcaaaatggaccgtta
ttttaccaaatagcagaaacgctgagctcctgggaagctaaagcagaactctccaatgat
gatggcacagatgaagttttccagaaactgttgtcaaatttttgggaccatcttttaaaa
atgtgtgtacttcatgttgatacgttggatgctgatgagaaatcattgtttgccatatct
ggtatgctagaaattcttcagaatccaaagactgctacaaacccaaaaaccataaaatct
ctaaaaatcagatttacagatgaggatgaatctgaaagaaacacagagaatggaaagctc
acggaagtgagaaatagtgactctgaaatacaggctgacttgcagcacagatcacttcta
aggaaagaacctttagagaatttagtctgcaaccttgctgaactgagtattgtgtatgtc
agtgaacagaagtcggaacagcatttgaaatttctctctgccctgctcaactctttttct
tcaaacagagtttttcaagtacttctagagcagggaaatgatgcaagctctgctcaagct
gaatcccaaaacgaaattaaagcacatcatgaaagtccatctgtacaatttctgtatatg
aatttaataacttggctgaaagaagactggaggaaagacacccattttctggttgatatt
ttgtacagtgtgcttaattgttgcaacagtaatgatgaaaggaaaatcattcttgatgat
ttaacgaagatggatctgaaatgggttatttttctccagataattcaaaaggcatgctcg
agcacaacaaaactttccttagtctctgactggctgaaaggagatacacttggagaaaga
cttgtaatgctggcagatgatctgtgtcacctgggtttaaaacctacagcagcctcagca
gaatcatcctcttcagaaaggtggactctcctgagcttagtgttgtcgcaacacattaaa
aatgaatctttgattggtgaaacttttgttgagaggattattgataaacttcaagcagct
ctgtctaaagctaaggatctttccgaagctggaaatagtgaaccatcagtatctttcatt
tgcgatgtagcctcaagctttttcagctcagttaaagagtgtttactgatgccatcctca
gaagacttgctgcttaccatattccaattgtgtgctcaaaggcaggatgctacacactta
acagatttacttgtatgtaaattaaaacacacttggatgtctggtgtaaattcacttgtg
cgtcaacttcggagtaagcagaaacagagtacttttttgcataaatctgcactgtgggtc
aagaatcaaattcagtcttcctctttggatgttaaaagccttcagattttgatctctgca
gttagtgatttgttgtctaagcttatggaagctgacgaacagtctggatgtcttgtggga
gcttatgttgagcatgtcacgccaaacgaaactgagtgggggaaattgcacgagtctcta
tccactgagtggatgcataaacctcttttggaaggaaggcttagtatgaattgtgaaccc
ttgggatcatgtgttaagctgcgtggcacaactaaactcccgggccatctgtgtacttca
gccttgttgagtaaaatggtgctacttgtattggaaaatgatatagtccatggaaatgat
gatgctgaaagaaagaaaattgacaatatcattgcagaactgttgtattcattacaatgg
attgaagaattggagaatcctccttatctgcttctggaatatcttcacatgttagaagaa
atgcacatcacatatgagaagttcagtacccttagtaatacagctagccttcaggaaaca
atatttgacagatcagaggaacatggaagactgtggtccttaaccatggctaaagtaatt
tgtgtggaaaaccctgtatcctgtgagaagaaacaactttttaagacaacagaagggttt
ctaccgttaacagagggcagattgcatacacttcagtgtctatcaccttttttaattgag
gaagaaaagaaagaacttgtcttccactgtgtggccaaacttatgacctgcacacagaaa
gagctttccagcacggatggagcatttgggtgtctttccattttgaactcctgcttgaat
gatagaagtattgattgtgatcatctactacctggaatactaaaaatcataatatcttgg
aaaaacgataatgaggacagctttctctttagctgcaatctgaaagaaacaagtgctcag
ttgctcggtttcaacatagagatgatccgttaccttcccttgttgctgaagtattccaca
gctcctttggccgataatgaatgggactttatcatgtgctccatgctggcttggttagag
acaacaagtgaaaaccgttccctttatcatgtcccgcttgtgcagatttttgcttgtgtc
agttgtgacttggcatctgcgcttagcgcttactttgaagctgcagctcctgaaactact
gaaaaccttcctgtgaacttgatcagtgaatggaaagaattcttttctgagggaattcac
aatttgctgttacctttgttggcgaaagtcacaggagaaaccaaaaatgcatctgaaggc
tcttttcagaactctgtgttaacatctttgggtgaagctctaacttacatctcgaaggac
cagttgttaaaccataaattgccagcaaagtttgttgcaggacagaaaacaaatcttcca
gataaactccagactctcctaaatacgttatctccattgttgcttttccgggctagacct
gtacagatttctgtctaccatatgttgtataaattaatgcctgaattgcctaaatttgat
gatgaagatctcaaatcttatggtgacgaagaggaggaatcggcattatcacctccagcg
gcacttatgtctgtcctggccactcaagaactcttgctagaaaacattctggaatgcatt
ccggttggagaatttgcagttattcagcccctgagcgatgagttctgccttgttctagga
tatcttctcacttggaagttaacattggctttcttcaaagcagcttcttctcagctacga
gttctctactcacaataccttagaagaactaaaagcttgaataaactgctttatcacttg
ttcaggcttatgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataag
gacacaaaaaccttctttactgaagagcttcatttagatgtgaaagggacaggagtcctg
tcatcccagattccacacttggcctgctctgtgtaccgtataacgctgaaagacttgccg
gccatggtcaggctttggtggaacagctgtgagaaacgtgtcttcaatgttgtagataaa
tttacaagcaaatatgtcagcagcgtgctttcttcacaggaaatatcttctgttcagact
agcacacagttatttaatggcatgacggtaaaagctcggtctgcggcacgggaagtcatt
gctacctattcagttgatgatatatttattgaactaataatacagcttccaccaaattac
ccactgggatccataacagttgagagtggaaagagggttggtgtggctgtacagcaatgg
cgcaattggatgctacagttaagcacgtatcttacacatcagaatggaagtattatggaa
ggcttgtctttgtggaaaaataatgtggataaatgttttgagggcgttgaagattgcatg
atctgtttttcggtcattcatggttccaactattctcttcccaaaagaacttgcagaaca
tgcaggaaaaagtttcattcagcttgcttgtacaaatggttcacatctagcaacaaatcc
acctgtccactctgtcgagagacatttttctga
DBGET
integrated database retrieval system
