Grus americana (Whooping crane): 129203729
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Entry
129203729 CDS
T11359
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
game Grus americana (Whooping crane)
Pathway
game03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
game00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129203729 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
game03021
]
129203729 (PCF11)
03019 Messenger RNA biogenesis [BR:
game03019
]
129203729 (PCF11)
Transcription machinery [BR:
game03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129203729 (PCF11)
Messenger RNA biogenesis [BR:
game03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129203729 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129203729
NCBI-ProteinID:
XP_054674568
LinkDB
All DBs
Position
1:211594833..211615272
Genome browser
AA seq
1708 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPVVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQRMSPTPHMTVKPPHQMAVQPEKTKPSPSPPLHDVKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSE
AKSKSPSPLKNKLPSAKDTKTQECESAKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVVNGAVQKQDTTTEESEKQSGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIAKTRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSDRFKRARYED
PEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQATARVGVDGQGSPFVDGPAAG
SSSRIDGPAGQAAMRFEGPLVAAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSYGQGGPFVDHPGQGYNGPSHGMQ
FQRPDLFDGSPGPNFNGPGGPGAQNFPLRGAGHYFDEKSLQGPQYGNFNNMPMGSNQVSL
MSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSK
TDSTSAQVNETSSQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYS
CGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAK
SQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKN
AIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNLMLNIVKQETQESCDSPKVKE
EPDDTPTACAEESTPASTDVKTEPDESV
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactgtatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagttgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacgtatgtctcccacacct
catatgacagttaaaccacctcatcagatggctgtgcaacctgaaaaaaccaaaccatcc
ccaagtcctccacttcatgatgttaaaatagtaaatagggatcctcgactgaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccgaacaca
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacagaagaaggaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttaaaaaataagctacccagtgctaaagatactaaa
acccaggaatgtgaaagcgcaaaagtatctgaaattagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagaagt
acagagaaaaaagaaaaagaggaacataagacgtgtgaacacagaccagtaggcagcaga
aataaagtagttaatggtgctgttcagaagcaagacacgactacagaggagtctgaaaaa
cagagtggaaaacaggggagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacacattctccaaaaagacgagagaggcgatcacccaaaagaaga
cttaggagtttatctcccacttcatcaactcctaaaattgcaaagacacgtcagatcggc
cctaagcagtctcacgttgaggaaggcacacaagcagcaagagatgaaagaaattccaat
aagagaaatgttaaacaagaggtgcgagatccaaggagggtgaaaaaagcccaagaagac
aggccccaagaaacagcaagccagcattcgacaaaagcttctcctgatccaaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgaagaacaccaagcactcggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggtaaaggaattttatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgctaatttacagattcccaaagaattgacatctgcaagcaagaga
gaattacttaagaaggccaatgaacgcttaacatccggtgaaataacacaagatgagttc
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagcccgacagaggaaaaatgtggtttgaaaaagaaacctcttctatca
gatgcagaattaacatattatgaacataaggctaaactaaaaagaacacaagttcagcat
tcattgtcgaggcttgatctgttggatcctgatgatattttggattatcatttgcctgat
gcattgctttctgggatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgac
agaaaagaaccatttggagaaaggtcaaggagacactctcctgtaagtggcactaataga
ccttttgccgataacctttcaccacttgagagtcggcgaagacttgaggaacaaaatgct
actaagggagcaagaggttctaagaacttcgatccttatgacagctggggagaatcagat
gagtttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagat
ggtgatgcaatctgcagatttgataatcgtgaagagagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcagcgaccgtttcaaaagagctaggtatgaagat
ccagagaaagcaccgtttccggaaagtccaggatcaagatttggaggcattgaagcaaag
cagaggataagtgcactaatggaagacagacctctatttgacggctcaccgagacaggcc
actgcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggt
tcaagttccagaattgatgggccagctggacaggccgccatgagatttgaggggcctttg
gtggcggcaggtgcatctcagtttgatggaccactggcaggagcaggaggagctggagcc
ctaagatttgatgggccaccagggcagctggcaggtgccttgaggtttgaaggaccccca
ggacaagttggtggaggaggtccactgaggtttgagggacctcttgggcagataggaggg
cctttgcggtttgaggggcctgcaggacagcctgtaggtggtcccagatttgaaggacct
ggagttggtctcaggtttgagggtccccgtggccagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattgggaccccatggtcaacctggaggtggcctccgatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcagatttgag
gggccacatggaccatcaggtggtgggctcagattggaaggaccgcatggtcagccaggt
gtaggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgat
ggtcctttgggtcgggccggtccgagatttgatggttgtcatgcagctggatttgatggt
cagcctggacagctctctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcgcctggccaacaggcacaaccacgattcgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcgcgttttgaaaatgtagctaaccatcctgcctcaagactagaaatgtcttacggacaa
ggcggtccatttgtcgaccatcccggccagggctacaatggaccatctcatgggatgcag
ttccagaggcctgatctgtttgatggttcgcctggaccaaatttcaatgggccaggtggc
ccaggagcacagaatttcccattgagaggagctggacattactttgatgaaaaaagtctt
cagggtcctcaatatggaaacttcaataatatgccaatgggaagtaatcaggtttctctc
atgtctgctcaaccagggccttatggccaaggtcaacagtatttgccaaatcctggaagt
tttgttcagaatcctgcaggagcccttccacattcgtatcctgataaccaccttgggcag
cttgatgtcaatgaattgtttgctaaactgttgtcaacagggatcctcaaactgtcaaaa
actgattccacttcagcacaagtgaatgaaacatcatcccagccagctgctgaagaggaa
gacgatgaccagaatgaagatcaaaatgtcccagacctcactaacttcacagttgaagaa
cttagacagcgttatgatagtgtaataaatcgactgtacactggaattcagtgttactca
tgtggaatgagattcactacttcacagacagatgtgtatgcggatcatttagattggcat
tatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatggtac
tacagtttaacagattggattgaatttgaagaaatagccgatttagaggagcgtgcaaag
agccagttctttgaaaaagctcacgaagaggttgtgttgaagacacaagaagctgcgaaa
gagaaggagtttcagagtgtccctgcgggaccagctggagcagttgagagctgtgaaatt
tgccaagagcaatttgaacagtattgggatgaggaagaggaagagtggcatctgaagaat
gctatcagagtagatgaaaagatttaccatccatcttgctatgaagattaccaaaataca
tcatcatttgattgcaccccatctcccagcaaaactcctgtagaaaatccactaaatcta
atgttgaacattgttaaacaagaaacacaagagtcctgtgactcgcctaaagtcaaagaa
gaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagatgtt
aaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
