Grus americana (Whooping crane): 129206474
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Entry
129206474 CDS
T11359
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
game Grus americana (Whooping crane)
Pathway
game04010
MAPK signaling pathway
game04210
Apoptosis
game04218
Cellular senescence
game04519
Cadherin signaling
game04620
Toll-like receptor signaling pathway
game04621
NOD-like receptor signaling pathway
game04622
RIG-I-like receptor signaling pathway
game04623
Cytosolic DNA-sensing pathway
game04625
C-type lectin receptor signaling pathway
game04920
Adipocytokine signaling pathway
game05132
Salmonella infection
game05164
Influenza A
game05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
game00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129206474 (NFKB1)
09133 Signaling molecules and interaction
04519 Cadherin signaling
129206474 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
129206474 (NFKB1)
04218 Cellular senescence
129206474 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
129206474 (NFKB1)
04621 NOD-like receptor signaling pathway
129206474 (NFKB1)
04622 RIG-I-like receptor signaling pathway
129206474 (NFKB1)
04623 Cytosolic DNA-sensing pathway
129206474 (NFKB1)
04625 C-type lectin receptor signaling pathway
129206474 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
129206474 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
129206474 (NFKB1)
05168 Herpes simplex virus 1 infection
129206474 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
129206474 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
game03000
]
129206474 (NFKB1)
Transcription factors [BR:
game03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
129206474 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Ank_KRIT1
GloB_C
Motif
Other DBs
NCBI-GeneID:
129206474
NCBI-ProteinID:
XP_054681624
LinkDB
All DBs
Position
4:55190451..55249480
Genome browser
AA seq
980 aa
AA seq
DB search
MAGEDSYIMGVSDPQMFPMDQFMGMNALFNNTNYITSDLPLRTDGPYLQIIEQPKQRGFR
FRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVGK
FCEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPELG
YLQAEGCGDRQLTEREREIIRQAAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVIS
DAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGSVWEG
FGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDK
EEVQRKRQKLMPNFSDGYGGGSGAGGGGMYGGGGGGAGSGFSYPSYGYTAFGGMHFHPGT
TKSNAGMKHGLSNSTAEQDGKSSDKESDKWDTKHDVKVETMEKNECRTSGDNEEKEDASS
RKTDVNEADCRWQDGLFLEKAMQLAKRHCNALFDYAVTGDVKMLLAVQRHLTVVQDDNGD
NVLHLAIIHLHTELVKNLLEVMPDLNYNDIINMRNDLYQTPLHLAVITKQAEVVEDLLKA
GADVSLLDRHGNSVLHLAATEGDEKILSLLLKHEKVSSMVDLSNGEGLGAIHMVVMANSM
SCLKWLIAAGVNVNAQEQKSGRTALHLAVEQDNIPLAGCLLLEGDADVDSTTYDGTTPLH
IAAGRGSTKLAAVLKAAGANPHAENFEPLFDLDDVKDDEDDDEGIVPGTTPLDMAASCEV
YDILNGKPYESAVVSEDLLTQGHLRELNESSKMQLYKLLELPDPNKNWSTLAQKLGLGIL
NNAFRLSPSPSKTLLDNYEVSGGTVQELIAALRQMDHTEAIEIIQKALSISQSPSHLEDD
NAKALPSSSPPTFANGETGELYNSKFQDNESMCDSGVETSFRKLSFTYSDSLNSKSSVTL
SKMTLGCGHESSVQSNYIAN
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaagattcctatattatgggagtgtctgatccccaaatgtttccaatggat
cagttcatgggaatgaacgcattatttaataatacaaattacatcacttcggacttacca
ctacgaacagatggaccctatcttcaaatcatagaacagccaaaacagagggggtttcgt
ttccgatatgtatgcgaagggccttcacatggtggacttcctggtgcttctagtgaaaag
aacaaaaaatcataccctcaggtcaaaatctgcaattatgttggacctgcaaaagtaatc
gtccagttagttactaatgggaaatatgtccacttacatgctcacagcttagtgggtaaa
ttttgtgaagatggagtgtgcacagttaatgcaggacctaaagatatggttgtggggttt
gcaaatcttggaatacttcatgtcacaaagaagaaagtgtttgaaactctggaaacacgc
atgatagatgcttgcaaaaaagggtacaacccaggactcttggtgcatcctgaacttggc
tatctgcaggcagaaggatgtggagacagacagctaactgaacgagaaagagaaattatt
cgccaggcagcagtacagcagactaaagaaatggatctcagtgtggtgcgtcttatgttt
acagcctttctccctgacagtaatggtagtttcacacggaaacttgatcctgttatatca
gatgcaatctatgacagcaaagctcccaatgcctccaacttaaaaatcgtaagaatggac
aggacagcagggtgcgtaacaggaggggaagagatttaccttctctgtgacaaggttcag
aaagatgatattcagatacgtttctatgaagaggatgagaatggtagtgtatgggaaggc
tttggagacttttctcctacagatgtacatagacagtttgctattgtgttcaaaacaccc
aagtatcgagatgtcaatatcacaaagccagcatctgtatttgtacagctgcgtcggaaa
tctgatctagaaacaagcgaaccaaagccttttctctactatccagaaatcaaagataaa
gaagaagtgcaaaggaaacgacagaagctcatgccaaacttctctgatggctatggtgga
ggcagtggtgcaggaggcggtggcatgtatggagggggaggtggcggtgctggctctggg
ttcagttatccttcatatggatacactgcttttggagggatgcatttccaccctggcaca
acaaagtccaatgctggaatgaaacatggactatcaaatagcacagctgaacaagatggg
aagagctctgataaagaaagtgacaagtgggacacaaaacatgatgtgaaagtagaaact
atggagaagaatgagtgcagaacctctggtgataatgaggagaaggaggatgcttcttcc
cgtaaaacagacgtaaatgaagcagattgcaggtggcaggatggtctgttcctcgagaag
gccatgcagcttgccaagcgtcactgcaatgctctctttgattatgctgtaactggagac
gtgaagatgctgttggctgttcagcgccatctcactgttgtccaggatgacaatggagac
aatgtccttcatttagcaattatccaccttcatactgagctggtgaaaaacctcttggaa
gtgatgcctgacttgaattacaatgacatcattaacatgagaaacgacctttatcagacc
cccttgcacctggcagtaatcacaaagcaggcagaggtggtagaagacttgctgaaggct
ggagcagatgtcagccttctggatcgccatggtaattctgtcttacacttagctgctact
gaaggagatgagaagattttgagtctactcctcaagcacgagaaggtatcttcaatggtc
gacctttccaatggtgaaggcctcggtgcaattcacatggtggtgatggcaaatagcatg
tcctgcctcaaatggctgattgctgctggagttaatgtcaatgctcaggaacaaaaatcc
ggccgaactgcattgcatttagctgttgaacaagacaacatcccactggcaggctgcctt
ttgcttgagggtgatgcagatgtggacagcactacgtatgatgggacaactcctcttcac
atagcagctggaaggggctctacaaagttggcagcagttcttaaagcagcaggtgcaaat
cctcacgctgagaactttgagccactgtttgatctagacgatgtgaaagatgatgaagat
gatgatgaagggattgtgcctggaacgacaccactggatatggcagccagctgtgaggtg
tatgacatattaaatggcaaaccttatgaatcagcagtggtttcggaggacttactgaca
caaggacacttgagagagctgaatgaaagttccaagatgcagctttacaaactattggaa
ttgcccgatccaaacaaaaactggtccactctagcacaaaaactgggtcttggcatactt
aataatgccttcaggttgagcccttccccatcaaaaactctgctagataactatgaggtt
tctggtggtacagttcaagagttgattgctgctttgagacagatggatcacacagaagcc
attgaaatcattcagaaagcactatccatctcacaaagtccatctcacctggaggacgat
aatgcaaaagctcttccatcatcatcaccacccacctttgcaaatggagagacaggcgag
ctttacaacagcaaatttcaagacaacgaaagcatgtgtgacagtggagtggagacctcc
ttccgcaaactgagctttacttactcagactctctgaacagcaagtcatcagtaacactc
agcaaaatgaccctgggctgtggacatgaaagttcagtgcaaagcaattatatagccaac
tag
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