Grus americana (Whooping crane): 129207901
Help
Entry
129207901 CDS
T11359
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
game Grus americana (Whooping crane)
Pathway
game03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
game00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129207901 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
game03041
]
129207901 (SF3B1)
03036 Chromosome and associated proteins [BR:
game03036
]
129207901 (SF3B1)
Spliceosome [BR:
game03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129207901 (SF3B1)
Complex B
129207901 (SF3B1)
Complex C
U2 SnRNP specific factors
129207901 (SF3B1)
Chromosome and associated proteins [BR:
game03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
129207901 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
PIK3R4-like_middle
Adaptin_N
Phage_T7_Gp15
Motif
Other DBs
NCBI-GeneID:
129207901
NCBI-ProteinID:
XP_054685569
LinkDB
All DBs
Position
6:31796149..31819361
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgcccttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatctatggtggcagtgacagcaggtttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccatctacaagtttgcttggccagaagaag
ccaggctaccatgctccagtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagctgcatctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattatccagttgggatcaagcagag
actcctggacatacaccatctctgcgatgggatgaaactccaggccgtgcaaagggtagt
gaaactcctggtgccaccccaggctcaaaaatatgggatccgactcccagtcatacacca
gcaggagctgcaacacccggacgggatacgcctggtcatgcaacaccaggccatggaggt
gccacttccagcgcacgtaaaaatcgatgggatgaaacacctaaaacagagagagatact
ccgggacacggcagtggatgggctgagacgcctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagctagtaaaagaaagtcacgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccatcggtacacca
gctatgaacatggcaactcctacaccaggtcatatcatgagcatgactcccgaacagctg
caggcttggcgttgggaaagggaaattgatgagagaaacagaccactttctgatgaagaa
ttggatgctatgtttccagaaggatataaggttcttcccccaccagctggttatgtacct
attcgcactccagcgcgtaagcttacagcaactccaacacctttgggtggtatgactgga
ttccacatgcagacagaagaccggaccatgaagagtgttaatgaccagccatctggcaac
cttccattcctaaaaccagatgatatccaatacttcgataaactgctggttgatgttgat
gaatcaactctgagtcctgaagaacagaaggagagaaaaataatgaaattactcctgaaa
ataaagaatggcacacctcccatgagaaaggctgcgttgcgacaaattactgataaagct
cgggaatttggggcagggccattgtttaatcagattctgcctctgctgatgtcaccaacg
cttgaagatcaggagcgtcacttgcttgtcaaagtcattgacagaattctttacaaactg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgacattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgtcgttgcctctgctttgggcattccttct
ctgctaccattcttgaaagctgtctgtaaaagcaaaaaatcctggcaggctaggcatact
ggcatcaagattgtccagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgaacatggtctggtggatgagcagcagaaagttcgcacc
atcagtgctttggctattgctgctttggctgaggcagctactccctatggtatcgagtca
tttgattctgttctgaagcctttatggaagggtatacgtcagcacagaggaaagggtttg
gctgcctttttgaaggctattggttacctgattccactcatggatgctgagtatgcaaac
tattatactagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccaccttttttcaaacacttctggcagcacagaatg
gcattggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaaaataatgggaaatctgggagcagcagac
attgatcataaactggaagaacaacttattgatggtatcttgtacgcctttcaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagttaaaccctacttgccacaaatctgtggtacagttttgtggcgtttgaacaacaaa
tcggctaaagttaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtgttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcacttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagatctgctgccacggcttacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttggacgcattgca
gaccgaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatccgaagagccacagtgaacacttttggttat
attgcgaaagcaattggacctcacgatgtattggctacactgctaaataacttgaaagta
caggaaaggcagaacagagtatgcactacagtagcaatcgctattgtagctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggcgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgccgtggtgcaacacatgtctcttggtgtttatgggtttggc
tgtgaagattctcttaatcatttgttaaattatgtgtggcctaacgtgtttgaaacctct
cctcacgtcattcaggcagttatgggggctctggagggccttagagttgctattggtccc
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagac
gtttattggaagatttataattcgatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataacgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
DBGET
integrated database retrieval system
