Gordonia amicalis: IHQ52_05375
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Entry
IHQ52_05375 CDS
T08222
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gami
Gordonia amicalis
Pathway
gami03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IHQ52_05375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_05375
Enzymes [BR:
gami01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IHQ52_05375
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IHQ52_05375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UKO92817
LinkDB
All DBs
Position
complement(1174601..1177078)
Genome browser
AA seq
825 aa
AA seq
DB search
MAGGEILEVDGRRISITNLSKVLYPATGTRKYDVIDYYSRIAEVMLPHLRNRIVTRKRWP
NGVESTPFFEKDLPDSAPDWVRRHGIQHSERVIEYALAEDRATLVWLAQMAALEIHVPQW
RLPIGPDGERMANRIVFDLDPGPRVPLHETAAVAVEIRNWLGGTTTYPVTSGGKGIHIYA
RLPKPVSSEAARKVAREVADEFARQHSDFITANMSKKIRDDKVFIDWSQNNASKTTLSPY
SLRGREQPWVAAPRTWDEIEDPTIAQLLYTEVLDRVADVGDLLAGLDAPYDDDPATASDD
VVGSSDTGDDLADPDTLRENITSDDHHGAGDDHAEETRSGQIINLREYRRKRDESKTPEP
FGDENHRQRLREAEDEVDEDHPESAPRAPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPK
NLPTDPDQNRLAVQTEDHPMDYAEFEGDIPAGEYGGGHVSIWDKGTFELEKWRDKEVIVR
LHGERLQGRYALIRTGDKNWLAHLMTDEPRPIVPDSLTDPRPMLATDEPIDKLNGRDWAF
EGKWDGYRLLVRSIGGEFRLTSRSGIDMTNDFPEFASITDDLGLMDVVLDGEAVAIDSTG
RTNFTLFTSRRHTEEPYTLKLHLFDILYLNGTSLLRKPWSVRREILEELAPAFRRSTYID
VPPLLPTPASAAIEYSREHNMEGVVAKRRDSVYQQGRRSTKWLKHKNWSDIEVVVGGYRP
GRGNRSHTIGSLLLGLPEETGLRYVGRVGTGFTDAQLRSLAEELEPLKISRSPFLEKLDR
PIASSAVWVLPKIVGEVRFMDWTTAGHLRHPSWRGIRRDKLPGDL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggagagatcctggaggtcgacggccgccggatctcgatcaccaatctctcc
aaggtgctctatccggcgaccgggacacgcaaatacgacgtcatcgactactactcgcgc
atcgccgaggtgatgctgccgcacctgcggaaccgcatcgtcacccgcaaacgctggccc
aacggtgtcgagtcgacgccgttcttcgagaaggatctgcccgacagcgcgcccgactgg
gttcgccgccatggcatccagcacagcgagcgggtcatcgaatacgcgctcgccgaggat
cgcgccacgctcgtctggctggcccagatggctgcgctcgagatccacgtcccgcagtgg
cggctgccgatcggccccgacggcgaacgcatggccaaccggatcgtcttcgacctcgac
cccggtccgcgtgtccccctgcacgagaccgcggccgtggcggtggagatccggaactgg
ctgggcggcaccaccacgtacccggtgaccagcggcggcaagggtattcacatctacgcc
cggctgcccaaaccggtgagctcggaagccgcccggaaggtcgcccgtgaggtggccgac
gagttcgcccggcagcacagtgatttcatcaccgccaacatgtcgaagaagatccgcgac
gacaaggtcttcatcgactggagccagaacaacgcctcgaagaccaccctgtcgccgtat
tcgctgcgcggacgcgaacaaccgtgggtcgccgcgccccgtacatgggatgagatcgag
gaccccacgatcgcccagttgctctacaccgaggtcctcgaccgagtggccgacgtcggc
gatctcctggccggtctcgacgctccgtacgacgacgatccggccaccgcctcggacgac
gtcgtcggttcctccgacaccggtgacgatctcgccgacccggacacgttgcgggagaac
atcacctccgacgaccatcacggcgccggcgacgaccacgcggaggagacgcggtcgggt
cagatcatcaatctgcgtgagtaccgtcgcaaacgcgacgagtcgaagacgccggaaccc
ttcggcgacgagaaccatcggcaacgcctccgggaagcggaggacgaggtggacgaggat
catccggaatccgcgccccgcgcaccgatcttcgtcatccaggagcaccacgcacggcga
ctccactacgacttccgtctcgaacacgacggcgtgctggtctcgtgggcggtgccgaag
aacctccccaccgatccggaccagaaccgactcgcggtccagaccgaggaccatccgatg
gactatgccgagttcgagggcgacatcccggccggagaatacggcggtggtcacgtatcg
atctgggacaaaggcactttcgagctggagaagtggcgggacaaagaggtcatcgtccgc
ctgcacggcgagcggctccagggccggtacgcactgatccgcaccggtgacaagaactgg
ctcgcccacctgatgaccgacgagccgcgccccatcgttcccgacagtctcaccgatccg
agaccgatgctcgccaccgacgagccgatcgacaagctcaacgggcgcgactgggcgttc
gagggcaaatgggacggttatcgactcctggtgcgctcgatcggcggcgagttccggctg
acgtcccgctcggggatcgacatgacgaacgattttcccgaattcgctagcatcaccgac
gatctcgggctcatggatgtggtgctcgacggcgaggcggtggccatcgactccaccggc
cgaaccaacttcacgctgttcacctcacgtaggcacaccgaggagccgtacacactcaag
ctgcacctgttcgacatcctgtatctgaacgggacgtcgttgctacgcaaaccgtggtcc
gtacggcgcgagatcctcgaggaactcgcgccggcctttcgtcgctcgacgtacatcgat
gtgccgccgttgcttccgacgccggcaagtgcggcgatcgagtacagccgcgaacacaac
atggaaggtgttgtcgccaaacgccgtgactcggtctatcaacagggccgacgctccacc
aagtggctcaagcacaagaactggagcgacatcgaggtggtggtcggcggatatcgtccc
gggcgcggcaaccggtcgcacaccatcggatcgcttctgctcgggctgcccgaggagacc
ggactgcgctacgtgggccgcgtcggaaccggattcaccgacgcgcagttgcgctctctc
gccgaggaactcgaaccgctgaagatctcgcggtccccattcctcgagaaactcgaccgt
cccatcgcgtcgagcgcggtctgggttctgcccaagatcgtcggcgaggtgcgcttcatg
gactggaccaccgccggccaccttcgccacccgagctggcgcggtatccgtcgggacaag
ttgcctggggacctgtga
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