Gordonia amicalis: IHQ52_08960
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Entry
IHQ52_08960 CDS
T08222
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gami
Gordonia amicalis
Pathway
gami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
IHQ52_08960
09124 Replication and repair
03420 Nucleotide excision repair
IHQ52_08960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gami03021
]
IHQ52_08960
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_08960
Enzymes [BR:
gami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IHQ52_08960
Transcription machinery [BR:
gami03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
IHQ52_08960
DNA repair and recombination proteins [BR:
gami03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
IHQ52_08960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
UKO93410
LinkDB
All DBs
Position
complement(1941909..1943588)
Genome browser
AA seq
559 aa
AA seq
DB search
MERVTDGPLIVQSDKTLLLEVDHPDAPAARAAIAPFAELERAPEHVHTYRVTPLALWNAR
AAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLVKHPAHGLTLVSLDRAVLL
EVMRNKKVAPMLGAQIDDDTVIVHPSERGRLKQVLLKVGWPAEDLAGYVDGEAHPIALAQ
DDWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQW
KRELIARTTLTEEEIGEYSGERKEIRPVTIATYQVMTRKSKGEYRNLDLFDSRDWGLIIY
DEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIEAQGW
IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILNKHQGAPTLVIGA
YIDQLEELGRELDCPVIQGSTKNKEREILFDRFRSGELQTLVVSKVANFSIDLPEASVAV
QVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDADYAAHRQRFLAEQGYAYR
ITDADDLLGPTIGDTTSAD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgaccgatggacccctgatcgtgcaatccgacaaaacgctgctgctcgag
gtcgaccaccccgacgcgccggcggcccgtgcggcgatcgcacccttcgccgagctcgaa
cgtgcccccgagcacgtgcacacctaccgggtcacgcctctcgccctgtggaatgcgcgc
gccgcgggtcacgacgccgaacaggtcgtcgacgcgctggtcacctactcgcgctatgcc
gtgccgcagccgctgctgatggacgtcgtcgacacgatgggccgcttcggccgcctgcag
ctggtgaagcacccggcgcacggactgaccctcgtcagcctcgaccgtgcggtgctgctc
gaggtcatgcgcaacaagaaggtcgccccgatgctgggtgcgcagatcgacgacgacacc
gtcatcgtccatccgtccgagcgcggccgcctcaagcaggtgctgctgaaggtcggctgg
ccggccgaggacctcgcgggttatgtcgacggcgaggcgcatcccatcgccctcgcccag
gacgactggcacctgcgcgactatcaggagatggcggccgactcgttctgggccggcggc
tccggtgtggtcgtgctgccgtgtggtgcgggcaagacgatggtcggcgcggccgcgatg
gccaaggccggcgccaccacactgatcctggtgaccaacaccgtcgccggccggcagtgg
aagcgcgagctgatcgcccgcaccacgctgaccgaggaggagatcggcgagtactccggc
gagcgcaaggagatccgtccggtcaccattgcgacctatcaggtgatgacgcgaaagtcg
aagggcgagtacaggaatctcgacctcttcgactcccgcgactggggcctgatcatctac
gacgaggtgcacctgctgcccgccccggtcttccgcatgaccgccgacctgcagtcgcgc
cgacgcctcggcctcaccgcgaccctggtccgcgaggacggccgcgaagatgacgtcttc
tccctcatcggccccaagcgttacgacgccccgtggaaggacatcgaggcccagggctgg
atcgcacccgccgagtgcatcgaggtccgcgtgacgctcaccgacgaggagcgcctgcag
tacgcggtcgccgagccagaggagaagtacaagctctgctccaccgcgcacaccaaggtc
aacgtggtgaaggcgatcctgaacaagcaccagggggcgccgacgctggtgatcggcgcc
tatatcgaccagctggaggagctcggccgcgaactcgactgcccggtcatccaggggtcg
acgaagaacaaggagcgcgagatcctgttcgaccgcttccgttccggcgagttgcagacg
ctcgtcgtgtccaaggtggcgaacttctccatcgacctcccggaggcgtcggtagccgtc
caggtgtcgggcaccttcgggtcacgccaggaagaggcccagcgcctcggtcgcctgctg
cgaccgaaacacgatggcggacaagcccacttctactcggtggtgtcccgcgacaccctc
gacgccgattacgccgcacaccggcagcggttcctcgccgagcagggttacgcgtaccgc
atcaccgacgccgacgacctcctcggcccgaccatcggggacaccacctccgcggactga
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