Gordonia amicalis: IHQ52_10570
Help
Entry
IHQ52_10570 CDS
T08222
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gami
Gordonia amicalis
Pathway
gami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IHQ52_10570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_10570 (mfd)
Enzymes [BR:
gami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IHQ52_10570 (mfd)
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IHQ52_10570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
DUF3638
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
UKO93687
LinkDB
All DBs
Position
2288107..2291682
Genome browser
AA seq
1191 aa
AA seq
DB search
MSTLRALSGLAALACADKSFREVRERRGEQRLDITAPDAARPFLVSCLAADADAPLLVVS
ANGREADDLTAELAEMLDDADAVAQFPSWETLPHERLSPSADTVGQRLAVLHRLANPGDR
PLRVVVTTVRSLVQPMAPGLGDVATVTLREGIEVDFDGLLAQLVEMAYERVDMVGRRGEF
AVRGGILDVFPTTADHPVRVEFWGDEITEMRAFSVADQRSQPEVEATEVRIHPGRELLLT
EKVRTRASDLAAENPDDTTLSEMLGKLAEGIPVEGMEALIPALVDGEMQLLTAVVPAGTR
VLVLDPEKVRTRAADLSKTGAEFLEASWTAAAMGANAPIDGRSGVGIDLEASAYRPLDDV
RAATLEAGRPWWTLSPLSTGSGDELELDLVPGPAPRGDEREIAATFAQLRAHVSDGKTAA
IVVAGKGTAQRVGERLSEAEVPYVIAEPGHRPEPGEVAVFGATLRNGIVCADAGLVVVTE
ADLTGTRVANVRDGRKLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGARRE
YLVLEYASSKRGQPADRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAVRE
IAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETIDQLTVIAEVKADMERPVPMD
RVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTERMSGFPVRVRGL
SRFTDAKESREITEAMAKGEVDIVIGTHRLLQTGITWKDLGLVIVDEEQRFGVEHKEHIK
SLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYAPKQVAAAIR
RELLRDGQVFYVHNRVSTIDKMAKDISNMVPEARVVVAHGQMGEDQLERTVSGFWNREYD
VLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSPDRPLT
ETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAV
EAYRAAADGQPVETQETGEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASAGDDAAVDAV
LVELTDRYGPPPVETTRLASIARLRLRCRERGIAEIGLAGQGVKISPLPLLDSEQVRLRR
LYSSATYRATTSVVTLPIPRTGGVGSARLRDDELIEYLTTFLTQLKPEPSG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacgctccgtgccctgtccggtctggccgcgctcgcgtgtgcggacaagtccttc
cgcgaggtccgcgaacgccgtggcgaacagcgcctcgacatcaccgcacccgatgcggcg
cggccattcctcgtctcgtgcctggccgccgacgccgacgccccgcttctcgtcgtctcc
gccaacggtcgggaggccgacgatctgaccgccgagctcgcggagatgctcgacgacgcc
gacgcggtggcccaattcccgtcgtgggagaccctcccgcacgagcggctgtcgcccagc
gcggacaccgtgggtcagcgactcgcggtgctgcaccgtctcgccaatcccggcgacagg
ccgctgcgggtcgtggtcaccacggtccgctcactcgtgcagccgatggcgccgggcctc
ggagacgtcgccacggtcaccctgcgcgagggcatcgaggtcgacttcgacggcttgctc
gcccaactcgtcgagatggcctacgagcgtgtggacatggtcggacgccgcggcgagttc
gcggtccgcggcggcatcctcgacgtcttcccgacgaccgccgaccacccggtccgcgtc
gagttctggggcgacgagatcaccgagatgcgggcgttctcggtcgccgaccagcgcagc
cagccggaggtcgaagcgaccgaggtgcgcatccacccgggacgcgaactgctcctcacc
gagaaggtccgcacgcgcgcaagcgatctcgccgcggagaacccggacgacaccacgctc
tccgagatgctcggcaaactggccgagggcattccggtggaggggatggaggcgctgatc
ccggcgctcgtcgacggcgagatgcagctgctgaccgcggtcgtcccggccgggacgcgt
gtgctcgtcctcgatccggagaaggtccggacccgcgccgccgatctgtccaagaccggt
gcggagttcctcgaggcgtcgtggacggccgcggcgatgggtgcgaatgcacccatcgac
ggccgctcgggtgtcggcatcgacctggaggcgagcgcctaccgtccgctcgacgacgtg
cgcgctgcgacgctcgaggcgggccgcccctggtggaccctgtcgccgttgtcgaccggg
agtggggacgaactcgagctggacctggtccccgggcccgctccacgcggcgacgaacgc
gagatcgcagccacgttcgcccagctgcgagcccatgtgtccgacggcaagaccgccgcg
atcgtcgtcgccggcaagggcaccgcccagcgcgtcggcgagcgactgtccgaggccgag
gtgccgtacgtgatcgccgagccgggacatcgtcccgagccgggcgaggtcgcggtcttc
ggtgcgacgctgcgcaacggcatcgtctgcgccgacgccggtctcgtcgtcgtcaccgaa
gcggacctcaccggtacccgcgtggcgaatgtccgcgacgggcgcaaactcccggccaag
cgtcgcaatcaggtcgacccgctggccttgaccgccggtgacctcgtcgtgcacgaccag
cacggcatcggcaagttcgtcgagatgatcgaacgcaccgtctcgggtgcgcgtcgcgaa
tacctggtcctggagtatgcatcgagcaaacgcggccagcccgccgaccggttgtacgtg
ccgatggacgccctcgatcagctgtcccggtacgtcggtggcgagcagccctcgctgtcc
aagctcggcgggtcggactggcagaacacgaagcgcaaggcgcgcaaggccgttcgcgag
atcgccggtgagctggtacagctctacgccgcacgtcatgctgccccgggtcacgccttc
gggcccgacaccccgtggcagcaggagatggaagacgccttcgacttcaccgagacgatc
gatcagctgaccgtcatcgccgaggtcaaggccgacatggaacgtccggtcccgatggac
cgcgtcgtcgtcggcgacgtcggctacggcaagaccgagatcgccgtgcgtgccgcgttc
aaggccgtccaggacggcaagcaggtggccgtcctggtgccgacgaccattctcgcgcaa
cagcatctgcagacgttcaccgagcggatgagcggattccccgtgcgggtgcgcgggctg
tcgcgtttcaccgacgccaaggaatcccgcgagatcaccgaggcgatggccaagggcgag
gtcgacatcgtcatcggtacgcatcgtctcctgcagaccggcatcacctggaaagacctc
ggactcgtgatcgtcgacgaggaacagcgattcggcgtcgaacacaaggaacacatcaag
tcgctgcgcacccacgtcgacgtgctgaccatgtccgcgacaccgattccgcgaacgctg
gagatgtcgatggccggcatccgcgagatgtcgacgatcctcaccccgccggaggaacgc
catccggtgctcacctacgtcggcgcctacgcgccgaagcaggtcgccgccgcgatccgt
cgtgagctgctgcgcgacggtcaggtgttctacgtccacaatcgtgtctcgaccatcgac
aagatggccaaggacatctccaacatggtcccggaggcgagagtcgtcgtggcacatggc
cagatgggggaggaccagctcgagcgcacggtgtcggggttctggaaccgcgaatacgac
gtgctggtctgtacgaccatcatcgagaccggtctcgacatctccaacgccaacacgctc
atcgtcgaccgtgccgagaacctcggcctctcgcagcttcatcagttgcgcggacgcgtc
ggccgaagtcgtgagcgcggttacgcctatctgctctacagtcccgatcgtccgctgacc
gagaccgcctacgaccggctggcgacgatcgcccagaacaacgaactcggcgccgggatg
gcggtggcgctcaaggacctcgagctgcgcggtgccggaaacgtgctcggcgcagagcaa
tcgggtcacgtcgcgggtgtgggcttcgatctgtacgtacgcctggtcggtgaggccgtc
gaggcgtatcgcgcggccgccgacggccaacccgtggagacgcaggagacgggcgaggtg
cgcatcgatctgccggtggatgcgcacatcccggtcgagtacgtcgactccgaccgcctg
cgcctggaggcgtatcgcaaactcgcgtcggccggcgacgacgccgcggtagacgcggtt
ctcgtcgaactcaccgaccgctatggtccgccaccggtcgagaccacccgactcgcgtcg
atcgcacgtctgcgtctgcgctgccgcgaacgcgggatcgccgagatcggtctggccgga
cagggggtcaagatctcgccgctgcccctgctcgacagcgaacaggtgcgcctgcggcgg
ttgtactcgtcggcgacataccgggcgacgacctcggtggtcacgctcccgatcccgcgg
accgggggagtcggctcggcacgtctgcgcgacgacgagctgatcgagtacctcaccacg
ttcctgacgcagctgaagccggagccgagcggctga
DBGET
integrated database retrieval system
