Gordonia amicalis: IHQ52_12175
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Entry
IHQ52_12175 CDS
T08222
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
gami
Gordonia amicalis
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_12175
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IHQ52_12175
Archaeal homologous recombinant proteins
IHQ52_12175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
AAA_29
SMC_N
AAA_15
Adenylsucc_synt
AAA_21
AAA_22
Asp_DH_C
Motif
Other DBs
NCBI-ProteinID:
UKO89855
LinkDB
All DBs
Position
2633155..2636130
Genome browser
AA seq
991 aa
AA seq
DB search
MRLHRIRIRAFGPFADEVTVDFDELGADGLFLLHGQTGAGKTTVLDAVAFALFGRVPGAR
DTNRRLHSDHAAPETVPEVELEATIGSRRLRITRSPEHERPKKRGDGMRKINACASLVWV
DGSGPDLTRIPEIGEAVVRLLGMSAEQFFQVVLLPQGDFARFLRAHSDEREELLERLFDT
ERFGDLEEWLRDRARESAATLAEHAGTLDRIAGQIVAISGTQAPAEPDFDWAQGCLDSAR
QAAEQALAESTAAQAAVEQAEAAHEHGRRVDELRRRGLQARERLARLADGETTLATAEQS
RRLALRAAPIAPLADDHERSDTEVADASAAADGARAALAELAEGRGLCETDCDDSALVAA
VDRWTEESGRWEPLAKRVAERPRLVADLDGLEKTIAAAEQQAAETRTRFESAPARRDEAV
AALRAADELRVQAPKLRAERDHARRVLQAFTDRDEVLAQLADAEQDLLDAREKHSAAREH
QLDIRERRLTGMAVELAGALVDGEPCVVCGSVGHPAPAAGDADASVGEAEEKEAAAAEER
ASAIKAIAQSAVAALRERQANLDAVIAGADRAATEAGHARLVADLASAERAAARTPALQD
AVERIDAEIADRRRTLADHETAQAGRRERLTALHENLKALDAEVQEATGGRMGIAQRRRE
LAELCRRTRTLREARRELDRARGRRTEIAERLAVACADAGFVGADEVRAAAASHTQIRHW
EKLLEEAAAIRAGTEETLADPDVCAALEAPEVDVARLTADLVTARARRDDAARVNAVAAQ
RRTDLEEYVAGFWAALDALAPLKARHDELQGLAELVSGRGQNSRRMSLRSYVLAARLDEV
LVAASGRLREMSSGRYEFVHSDAAGVRGRRGGLGIEVRDEYTGVLRATTTLSGGETFFAS
LALALGLADVVSAESGGRVLDTIFIDEGFGTLDPEALDLVMGVLDDLRSGGRVVGVVSHV
DELRARIPAQLHVLRGEHGSTLRVQSPLGVS
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagactgcaccggattcggattcgcgccttcggcccgttcgcggatgaggtcaccgtc
gacttcgacgagctcggtgccgacggcctgttcctcctgcacggacagacgggcgcgggc
aagaccaccgtcctcgacgcggtggcgttcgcgttgttcggccgggtccccggcgcacgc
gacaccaatcgtcgcctgcactcggatcatgctgcgcccgagacggttccggaggtcgaa
ctcgaggccaccatcggatcgcgccggttgcgtatcacgaggtcgcccgaacacgaacgc
cccaagaagcgcggcgacggaatgcggaagatcaatgcctgcgcatcgctggtctgggtc
gacggttcgggtccggacctgacgcgcatccccgagatcggggaagcggtcgtccggctg
ctcggcatgagcgccgagcagttcttccaggtggtcctgctgccccagggcgacttcgcg
cgattcctgcgggcacactccgacgaacgagaagaattgctggagcggctcttcgacacc
gagcgcttcggcgacctcgaggagtggctccgcgatcgggcccgtgagagcgcggccaca
ctggccgagcacgccggcaccctcgaccgcatcgccgggcagatcgtcgcgatcagcggc
acccaggcgcccgcggaacccgacttcgactgggcccaggggtgtctcgactcggcccgg
caggccgcggaacaggcactggcggaatcgaccgccgcacaggcggcggtcgagcaggcg
gaagccgcccacgagcacggccggcgcgtcgacgagttgcgtcgtcgtgggctgcaggcg
cgtgaacgactcgcccggctcgccgacggagagacgacgctggcgaccgccgagcagtcg
cgtcggctcgccctgcgcgccgcacccatcgcgccgctcgccgacgaccacgagcgctcc
gacaccgaggtcgccgacgcgtccgccgcggccgatggcgcacgcgccgccctcgccgaa
ctcgccgagggccggggcctgtgcgaaaccgactgtgacgattcggcgctcgtcgcggcc
gtggaccgctggaccgaggaatcgggccgctgggaaccactcgcgaagcgcgtcgcggag
cgtccccggctcgtcgccgacctcgacggactcgagaagacgatcgcggccgcggaacag
caggccgcggagacacgtacacgattcgagtccgcgccggcacgccgcgacgaggcggtc
gccgcgcttcgggccgccgacgagttgcgtgtccaggcgccgaagctgcgtgccgaacgc
gaccacgcccgccgggtcctccaggccttcaccgatcgcgacgaggtgctcgcgcagctg
gccgacgccgagcaggacctcctcgacgcgcgggagaagcattctgccgcaagagaacac
cagctcgacatccgcgagcgacgcctcaccgggatggccgtcgaactggccggcgccctc
gtggacggggagccgtgtgtcgtctgcggctcggtgggacatcccgcgccggctgccggc
gacgccgacgcctccgtgggtgaggccgaggagaaggaggctgcggccgccgaggaacgt
gcgagtgcgatcaaggccatcgcgcagtccgccgtcgccgcgctgcgggaacggcaggcc
aatctcgacgccgtcatcgccggcgccgatcgcgccgcgaccgaggccggtcatgcccga
ctggtcgccgacctcgcgtccgcagagcgagcggccgcgcgcacgcccgctctgcaggac
gccgtcgaacggatcgacgccgagatcgccgaccggcgccggactctggccgaccacgag
accgctcaagcggggcgtcgtgaacgcctgacggctctgcacgagaacctgaaggccctc
gacgccgaggtccaggaggcgaccggcgggcggatggggatcgcccagcgccgtcgcgag
ctcgccgaactctgtcgccgcacaaggactctgcgggaggcccgacgcgaactcgaccgg
gcccgtggccgtcgcaccgagatcgccgagcggctcgccgtcgcctgtgcggacgccgga
ttcgtcggcgcggacgaggtgcgggctgccgccgcgtcgcacacgcagatccgtcactgg
gagaagctgctcgaagaggcggcggcgatacgcgccggcaccgaggagaccctcgccgat
cccgacgtatgcgcagcgctggaggcaccggaggtcgacgtcgcccgtctcaccgcggat
ctggtgaccgcacgggcccgtcgtgacgatgccgcccgcgtgaatgcggtggcggcacaa
cgccgtaccgacctcgaagagtacgtggcgggattctgggcggctctcgatgcgctggcg
ccgctgaaggcgcggcatgacgagttgcagggtctcgccgagctcgtgagcggacgcgga
cagaactctcgtcgtatgtcgctgcggtcctatgtgctggccgcgcggctcgacgaggtg
ctggtcgcggcatcgggccgcctgcgcgagatgtcctcagggcgatacgaattcgtccac
tccgacgccgccggcgtacgtggccggcgcggcggtctggggatcgaggtacgcgacgag
tacaccggcgtgctgcgcgccaccaccacgctgtcgggtggggagaccttcttcgcgtcg
ctggccctcgcgctgggcctcgccgacgtcgtgtccgccgaatccgggggccgggtcctc
gacacgatcttcatcgacgagggtttcggcaccctcgacccggaggccctcgacctcgtc
atgggcgtcctcgacgacctccgctccggcggccgcgtcgtcggcgtcgtcagccacgtc
gacgagttgcgagcccgaatcccggcccagctgcacgtcctgcggggcgaacacggctcg
acgctacgggtgcagagtccactcggcgtgtcgtga
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