Gordonia amicalis: IHQ52_12555
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Entry
IHQ52_12555 CDS
T08222
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gami
Gordonia amicalis
Pathway
gami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHQ52_12555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gami03019
]
IHQ52_12555
03009 Ribosome biogenesis [BR:
gami03009
]
IHQ52_12555
Enzymes [BR:
gami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IHQ52_12555
Messenger RNA biogenesis [BR:
gami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IHQ52_12555
Ribosome biogenesis [BR:
gami03009
]
Prokaryotic type
rRNA helicases
IHQ52_12555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
7TMR-HDED
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKO89921
LinkDB
All DBs
Position
2715613..2717382
Genome browser
AA seq
589 aa
AA seq
DB search
MSTSEQGEHGAPADTSAQDAPGGSFDDLGIEPRVRAAITDVGYETPSPIQAATIPPLMDG
RDVVGLAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGRYSAHMPE
VKVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLT
MGFAEDVERILAETPDTKQVALFSATMPSSIRRLAQRYLKSPQEITVKSKTATAQNITQR
YLQVSHQRKLDALTRFLEVEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQ
RERTINQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSG
NALLFVSPRERHLLRAIERATRQELTEIGLPSVDDVNAQRVAKFGESITQNLSSDNLDLF
RGLIENYARDNDVAMADIAAALALETRDGGFLLSPDPPESEKRANRERERTPRRPGASFA
TYRIAVGRKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSSLRH
TKIGKNPIDIRKDLGSPRTRGGKRGGPQGGRDNWGKRPSPRVAGRSRRS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgaacaaggcgagcacggcgcgccggctgacacctccgcacaagacgcc
cctggtggttcgttcgacgatctcggcatcgagccgcgagtccgcgccgcgatcaccgac
gtcggctacgagaccccctcgccgatccaggcggcgacgatcccgccgctgatggacggc
cgcgacgtcgtcggcctggcgcagaccggcaccggcaagaccgccgccttcgcgatcccg
atcctctcgcggctcgacacctcggcccgcacgccccaggcgctgatcctcgcgccgacc
cgtgagctcgccctgcaggtgtcggaggccttcggccgctactccgcgcacatgcccgag
gtcaaggtcctgccgatctacggcgggcagtcctacggtgtgcagctcgcgggcctgcgg
cgcggcgcgcaggtgatcgtcggcacgcccggtcgtgtcatcgaccacctcgacaagaag
accctcgacatctccggactcgagttcctcgtgctcgacgaggccgacgagatgctcacg
atgggcttcgccgaggacgtcgagcgcatcctcgccgagactccggacaccaagcaggtc
gcgctgttctccgcgaccatgcccagctcgatccgccggctcgcccagcgctacctgaag
tcgccgcaggagatcaccgtcaagtccaagacggcgaccgcgcagaacatcacgcagcgc
tatctgcaggtgtcccaccagcgcaaactcgacgcgctgacccgattcctcgaggtcgag
gaattcgatgcgatgatcgtgttcgtccgcaccaagcaggcgaccgaggagctcgcggag
aagctccgttcgcgcggactgtccgcggtcgcgatcaacggcgacctcgctcaggcgcag
cgcgagcggaccatcaaccagctcaagaacggctcgatcgacatcctcgtggccaccgac
gtggccgctcgcggtctcgacgtcgaccggatctcccacgtcgtgaactacgacatcccg
cacgacaccgagtcgtatgtgcaccggatcggacgcaccggccgcgccggacgttcgggc
aacgcgctgctcttcgtctcgccgcgtgagcgccacctgctgcgtgcgatcgaacgggcg
acgcgtcaggaactgaccgagatcggcctgcccagcgtcgacgacgtgaacgcgcagcgt
gtcgcgaagttcggcgagtcgatcacccagaacctgtcctcggacaacctggacctgttc
cgcggtctcatcgagaactacgcccgcgacaacgacgtggcgatggccgacatcgctgcc
gcgctggccctcgagacacgcgacggcgggttcctcctgtcgcccgatccgccggagtcg
gagaagcgggcgaaccgtgaacgggagcgcaccccgcgccggcccggtgcgagcttcgcc
acctaccgcatcgcggtcggccgcaagcacaaggtgtccccgggtgcgatcgtcggcgcg
atcgcgaacgagggcggcctgacccgcgcggacttcggcaacatcagcatccgcgacgac
ttcagtctcgtcgagctgcccgacgacctcgacaacgagaccctgtcgtcgctccgccac
accaagatcggtaagaacccgatcgacatccggaaggacctcggctccccgcgcacccgc
ggcggcaagcgcggcggaccgcagggtgggcgtgacaactggggcaagcggccgtctccg
cgggtcgcgggtcgcagtcgccggtcctga
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