Gordonia amicalis: IHQ52_13020
Help
Entry
IHQ52_13020 CDS
T08222
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gami
Gordonia amicalis
Pathway
gami03030
DNA replication
gami03410
Base excision repair
gami03420
Nucleotide excision repair
gami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IHQ52_13020 (polA)
03410 Base excision repair
IHQ52_13020 (polA)
03420 Nucleotide excision repair
IHQ52_13020 (polA)
03440 Homologous recombination
IHQ52_13020 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gami03032
]
IHQ52_13020 (polA)
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_13020 (polA)
Enzymes [BR:
gami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IHQ52_13020 (polA)
DNA replication proteins [BR:
gami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IHQ52_13020 (polA)
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IHQ52_13020 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IHQ52_13020 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
Hydrolase
HHH_2
Motif
Other DBs
NCBI-ProteinID:
UKO90006
LinkDB
All DBs
Position
2827779..2830526
Genome browser
AA seq
915 aa
AA seq
DB search
MSPAQSSPAATRTGSKVKTKQPVLMLLDGHSLAYRAFFALPAENFKTHSGQTTNAVYGFT
SMLINLLRDEEPTHIAAAFDVSRKTFRSEMYPEYKAQRSKSPDEFNGQVDLTKEVLDALG
VTVMAIEGYEADDIIATLATQAREQGFKVLIVTGDRDSLQLVDASTTVLYPRKGVSDLTR
FTPEEVEKKYGLTPAQYPDYAALRGDPSDNLPGIPGVGEKTASKWIREYGSLASLVDHVD
EVKGKVGDALRAHLASVQTNRQLTELIRDMQLPAGPDDLAMVGWDRDRIHQLFDDLEFRV
LRDRLFSTLSSVEPEAEAGFDLDGSVLGAGEVASWLTEHARTGRTGLAVTAPHVVVGSDP
TGLAIAAADGSSAYVDVTTLTPEDDAALANWLADPDALKAVHEAKWAVHALRSRGWKLDG
VTSDTSLAAYLVRPGQRTFNLDDLALRYLRRELRADTGAGDGQMSLLDDDTEGKVAEQHM
LEARAVQELADTLDIELDRIDSKPLLTEMELPLSFVLADLEAAGIAVDVDHFNALAQMFN
DRIRAAAESAYEVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADALQSLYEKT
EHPFLAHLLEHRDATRLKVTVDGLLKSVADDGRIHTTFNQTIAATGRLSSTEPNLQNIPV
RTEAGREIRRGFIVGTDQASEVNYESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLH
NFVGSRAFGVPIDEVTIEMRHRVKAMSYGLAYGLSAFGLAAQLKISREEAKEQMEAYFAR
FGGVRDYLHDVVAEARRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAAD
IIKVAMINVHKRFVAEKLTSRVLLQVHDELVVEVAPGERDAVEAAVREEMGNAITLSVPL
EVSVGFGRSWDDAAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccagcgcagagttccccggcagcaacccgtaccggcagcaaggtcaagaccaag
caaccggtcctcatgctcctcgacggacattccctggcatatcgggcgttcttcgcgctc
ccggccgagaacttcaagacgcactccgggcagaccacgaacgccgtctacggcttcacc
tcgatgctgatcaacctgctgcgcgacgaggagccgacccacatcgcggccgccttcgac
gtctcgcggaagacgttccgctcggagatgtacccggagtacaaggcgcagcgctccaag
tcgcccgacgagttcaacgggcaggtcgacctcaccaaggaggttctcgacgcgctgggc
gtcacggtcatggccatcgagggctacgaggccgacgacatcatcgcgaccctcgcgacc
caggcccgcgaacagggtttcaaggtgctgatcgtcaccggtgaccgcgattcgctccag
ctcgtcgacgcctcgaccacggtcctctacccgcgcaagggtgtctcggacctcacgcgt
ttcacccccgaagaggtggagaagaagtacggtctcaccccggcgcagtacccggactac
gccgcactgcgcggcgaccccagcgacaacctgcccggcatccccggggtgggggagaag
actgcgtcgaagtggattcgtgaatacggttcgctggcctcgctggtcgatcacgtcgac
gaggtgaagggcaaggtcggcgacgccctgcgtgctcatctcgcctcggtgcagaccaac
cgtcagctcaccgaactcatccgcgacatgcaactgccggccggccccgacgacctcgcg
atggtcggctgggatcgcgaccgcatccaccagctcttcgacgacctcgagttccgcgtc
ctgcgcgaccgcctgttctcgaccctgagttccgttgagcccgaggccgaagccggattc
gacctcgacggttcggtcctcggtgccggtgaggtcgcgagctggctcaccgaacacgcc
cgaacgggccgcacgggtctcgcggtgaccgcgccgcacgtcgtcgtgggctccgacccg
accggtctggcgatcgcggccgccgacggctcgtcggcgtacgtcgatgtgaccacgctg
acgccggaagatgatgcggcactggccaactggcttgccgatcccgacgcgctgaaggct
gttcacgaggccaagtgggcggtgcacgcgctgcgctcgcgcggctggaagctcgacggg
gtcaccagcgatacctcgctggcggcatatctcgtccgccccggacagcggaccttcaac
ctcgacgacctggccctgcggtatctgcgccgggaactgcgcgccgacacgggtgcgggt
gacggccagatgtcactgctcgacgacgacaccgagggcaaggtcgccgaacagcacatg
ctcgaggcgcgggcggtacaggaactcgccgacacgctcgacatcgagctcgaccgcatc
gactccaagccgctgctgaccgagatggagctgccgctgtcgttcgtgctggccgacctc
gaggccgccggcatcgccgtcgacgtcgaccacttcaatgcactcgcgcagatgttcaac
gaccggattcgtgcagccgcggaatcggcctacgaggtcatcggcgaacagatcaacctg
ggctcgcccaagcagttgcagaccgtgctcttcgacaagctcgacatgccgaagaccaag
aagaccaagaccggttacaccaccgacgccgacgccctgcagtcgctgtacgagaagacc
gaacatcctttcctcgcacaccttctcgagcatcgcgacgccacgaggctgaaggtcacc
gtcgatggtctgctgaaatcggtggcggacgacggtcgcatccacaccaccttcaaccag
accatcgcggccaccggccggttgtcgtcgaccgagccgaacctgcagaacatcccggtc
cgcaccgaggccggacgcgagatccgccgcggcttcatcgtcggcaccgaccaggcgtcc
gaggtcaactacgaaagtctgatgaccgccgactacagccagatcgagatgcggatcatg
gcgcacctgtcggaggacgagggactgatcgaggccttcaacaccggtgaggacctgcac
aacttcgtcgggtcgcgtgccttcggggtgccgatcgacgaggtgaccatcgagatgcgt
caccgcgtgaaggcgatgtcgtatggacttgcctacggcctcagcgctttcgggctcgcg
gcacagctgaagatcagccgcgaggaggccaaggaacagatggaggcgtacttcgcgcgc
ttcggcggcgtacgtgactatctgcacgatgtggtcgccgaggcccggcgcaacgagtac
acggcgaccctgttcggccgccggcgttacctgcccgacctgaacagcgacaactggcag
cggcgccagtccgcggagcggatggcgctcaacgcacccatccagggcaccgcggccgac
atcatcaaggtcgcgatgatcaacgtccacaagcgattcgtcgcggagaagctgacatcg
cgggtgctgctgcaggtccacgacgaactcgtggtcgaggtggcgcccggtgagcgggac
gcggtggaggccgcggtgcgtgaggagatgggtaacgccatcacgctgtcggtcccgctc
gaggtgtcggtcgggttcggtcggtcctgggacgacgcggcccactga
DBGET
integrated database retrieval system
