Gordonia amicalis: IHQ52_13760
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Entry
IHQ52_13760 CDS
T08222
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gami
Gordonia amicalis
Pathway
gami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IHQ52_13760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_13760
Enzymes [BR:
gami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IHQ52_13760
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IHQ52_13760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
AAA_25
KdpD
Motif
Other DBs
NCBI-ProteinID:
UKO90132
LinkDB
All DBs
Position
3008185..3011637
Genome browser
AA seq
1150 aa
AA seq
DB search
MRRPETFDITAELPEHTTVLEASAGTGKTYAIVGLAARYLADGVPIAEMLLVTFSRAATA
ELRERMRARVRELLDALADPAEVLSGSAHAADALLRQLASGTPGEVLARRRNLARALSDF
DASTIATTHTFCNRMLEALGFLGERELVYSIVEEVDELTEEVALDLYLRGFWASDAPEFS
FADAREIARDAVRQATVELAPDTSEPSGGSAADDVAARRVSFAKAVRQHVETRKRDARVR
TYDDLQAILHRIVNDPVVGDRACQRIRDTFTVVLVDEFQDTDPLQWDILRRCFHGHRRMI
LVGDPKQSIYGFRGAEVLSYLAAVSSADTLRALDVNRRSDGALVEALQHLYGGATLGHPD
IVARPVRAAFAGSRLEGRPPLRLRAFLRGDFASLNSFNLPGVKEVRSRIAADVADDIATV
LARGDRIDIDGVSRPVDPGDIAILVRLNSTIEPLQAELAERGINSVIGSGINVFSTSAAQ
HWLWVLRAVEQPSRPDRVRMAALTTLFGWSTERVATATEPEVAELGAELSMLARVFAQGG
FAAMAQRLFDAHEVAARVLTVENGERTLTDLIQVSALCNKHVVETGEGLSALVEWLTERI
ADTSSRRRYEDQSRRLDRDTQAVQIMTVHASKGLQFPIVYVPYGWDGTWVNDRGNITYHD
ESGTRRLDVGGQQAPDRAARRRRYADEVAGEDLRLLYVALTRAQSQVVAWWAPSRNTTTG
PLHRLIFGRENAVRSSTGEPEWTVAGEVPIPEADVDCVGVLRTLTERDPAISVEPAGRLD
ADVVAPPAGDGEGADALGIAHFDRRIDQDWRRTSYSALTADVAHGAHGAPGGPPTSVVET
GSEPDDEVTDILDDEPIARPDDVVDDARTDSDARRPGMASLMNGLPFGAAFGTLVHEVLE
YVDTSAPDIEAHVRELCSRVLGALAGDIDPDRLVAALVGVLTTPLGFGDLWSIDPRDRLA
ELDFELPLGPADERTSGGGTTLGRLADLMELHLPESDPLRAYATHLRAVPGRRLRGFLTG
SIDSVLRIPDGRYVIVDYKTNRIRPGDLVVEDFDAEAMAGEMIAAHYPLQAMLYSVALHR
YLRWRLPGYDPDRHLGPVQYHFVRGMAGPDTPPGCGVFEWVLPSGLVAGLSDALAGVEPN
ASAGTGGRGR
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtccggagaccttcgacatcaccgccgaactcccggaacacaccacggtgctc
gaggcgagcgccgggacgggcaagacgtacgcgatcgtgggactcgcggcacggtatctc
gccgacggtgtgccgatcgcggagatgctgctcgtcacgttcagccgggcggcgacagcc
gaactgcgcgaacggatgcgggcgcgtgtgcgggaactgctcgacgccctggccgatccc
gcggaggtcctgtccgggtccgctcatgcagccgacgcgttgttgcggcagttggcgagc
ggcacacccggggaggtcctcgcgcgccgacggaatctcgcccgcgcactgagtgacttc
gatgcgtccacgatcgccaccacccacacgttctgcaaccggatgctggaggcgctggga
ttcctcggcgaacgggaactcgtctactccatcgtcgaagaagtcgacgaactcaccgag
gaggtcgcgctcgatctctacctgcgcggtttctgggccagtgacgcaccggaattcagc
ttcgccgacgcacgggagatcgcgcgcgacgcggtgcgtcaggcgacggtcgaactcgca
ccggacacgagcgagccgtccggggggtcggccgccgacgacgtcgcggcacgccgggtc
agcttcgccaaggcggtccggcaacacgtcgagacccgcaaacgggacgcccgcgtccgt
acctacgacgacctccaggcgatcctgcaccgcatcgtcaacgatccggtggtgggcgac
cgtgcctgccaacggatccgcgacacgttcaccgtggtgctggtcgacgagttccaggac
accgatccgttgcagtgggacatcctgcgccgctgcttccacggccaccgccggatgatc
ctcgtcggcgatccgaagcagtccatctacggtttccgcggtgccgaggtgctgagctat
ctcgcggcggtgtcgtcggccgacacactccgggcgctcgacgtgaaccgccggtcggac
ggcgcactcgtcgaagcactgcagcacctttacggcggagcgaccctggggcatccggac
atcgttgcgcgtcccgtccgggccgcattcgccggcagtcggctcgagggccgcccgccg
ctgcggctccgagcgtttctccgcggcgacttcgcgtctctcaactcgttcaacctcccg
ggtgtcaaggaggtgcgatcgcgcatcgccgccgatgtcgccgacgacatcgcgaccgtg
ttggcacggggagaccggatcgacatcgacggggtgtcccggccggtcgatcccggggac
atcgcgatcctcgtccggctcaacagcacgatcgaaccgctgcaggccgaactcgccgaa
cgaggcatcaactcggtgatcgggtcgggcatcaacgtcttctcgacctcggccgcccag
cactggctgtgggttctgcgcgccgtcgaacagccgtcacgccccgaccgggtgcggatg
gccgcactgaccacgctcttcggttggtccaccgaacgggtcgcgaccgccaccgagccg
gaggtcgccgaactcggcgccgaactgtccatgctcgccagggttttcgcacagggcgga
ttcgccgcgatggcccaacgactgttcgacgcgcatgaggtggccgcccgggttctcacc
gtcgagaacggggaacgaacccttaccgacctcatccaggtgtcggcgttgtgcaacaaa
catgtggtcgagaccggcgaggggctcagcgcgctcgtcgagtggctgaccgagcggatc
gccgacacctcgtcacgccggcgctacgaggaccagagtcgtcgcctcgaccgcgacacc
caggccgtccagatcatgaccgtgcacgcgagcaagggactgcagttcccgatcgtgtac
gtgccctacgggtgggacggcacgtgggtcaacgatcgcgggaacatcacctaccacgac
gaatcggggacccgccggctcgatgtgggaggacagcaggcaccggatcgtgccgcccga
cgccgacgttatgccgacgaggtcgcgggggaggacctgcggctgctctacgtcgcgctc
acccgcgcccagtcacaggtcgtcgcctggtgggcgccgtcgcggaacaccacgaccgga
ccactgcaccggttgatcttcggacgcgagaacgcggtgcggtcgtcgaccggagaaccg
gaatggacagttgccggggaggtgcccattccggaggccgacgtcgactgtgtgggtgtt
ctgcgcaccctcaccgaacgtgatcccgcgatctctgtcgaaccggccggtcggctcgat
gcggatgtcgtggcgccacccgccggcgacggggagggtgctgatgctctgggcatcgcg
cacttcgatcgccggatagaccaggactggcgtcgaacctcgtattcggcactcaccgcc
gacgtcgcgcatggcgcgcacggtgcacccggagggccgccgacctccgtcgtggagacc
ggcagcgaacccgacgacgaggtgaccgacatcctcgacgacgagccgatcgcccggccg
gacgacgtggtcgacgacgcccgaaccgattcggacgcacgtcgtccggggatggcatcg
ctgatgaacgggctaccgttcggcgcggccttcggcaccctggtccacgaggttctcgag
tacgtcgacacctctgcgcccgacatcgaagcgcacgtccgggaactgtgttctcgggtg
ctcggcgcgctggccggtgacatcgaccccgaccggctcgtcgccgcgctggtcggcgtg
ctcaccacacctctcggtttcggggatctgtggagcatcgatccgcgtgatcgcctcgcc
gaactcgatttcgaactgccgctcggccccgcggacgagcggacatccggcgggggcacg
acgctcgggcgcctcgccgatctgatggaattgcatctgccggaatcggatccgctgcga
gcgtacgccacgcacctgcgcgcggtgcccggtcggcgtcttcgtggtttcctcaccggc
agtatcgactcggtgctgcggatccccgacggccgttacgtgatcgtcgactacaagacc
aaccgcatccgcccgggcgacctcgtggtcgaggacttcgacgccgaggcgatggccggt
gagatgatcgccgcccactatccgttgcaggcgatgttgtactcggttgcgctgcaccgg
tatctgaggtggcggttgcccggttacgacccggatcgtcacctcggtccggtgcagtac
cacttcgtgcgcggcatggccggaccggacactccgcccggatgcggtgtcttcgaatgg
gtgctgcccagcggtctcgtcgccggtctgtccgacgcactggccggggtggagccgaac
gcgtccgccgggaccggggggagaggtcgatga
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