Gordonia amicalis: IHQ52_16635
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Entry
IHQ52_16635 CDS
T08222
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gami
Gordonia amicalis
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gami03016
]
IHQ52_16635
Enzymes [BR:
gami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IHQ52_16635
Transfer RNA biogenesis [BR:
gami03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IHQ52_16635
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
Motif
Other DBs
NCBI-ProteinID:
UKO90648
LinkDB
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Position
3642773..3644047
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AA seq
424 aa
AA seq
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MDTPPENPTPEDEAPEVEPLLAPAGGVPPVLSTAAEFADAARALAAGEGPIAVDTERASG
YRYSQRAYLIQIKRRGAGSFLLDPIADPGALAPVIDALRGPEWVLHAADQDLPCLRELGF
ECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDEWLNYAALDV
EVLVELRDAMDAALAESGKDGWAREEFAYVLSRPPAPPRTDRWRKTSNIHTVKSARALAA
VRELWMAREELAERRDVAPGRVLPDTAIVNAATADPRSNSELTRLPIFGGPRQRRQAGIW
LSALQRARELPDNELPARKTNGPGLPPVSRWEQRNPEAAARMQKVRPALKEVAESRNLPV
ENLLAPDVVRQLCWDGLRKPVTTEAVDAHLAAAGARPWQRRLSVDALTEALRGGGATETG
DGPE
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtggacacaccaccagagaacccgacgccggaggacgaggctcccgaggtcgagccgctg
ctcgcgcccgccggcggtgtcccgccggtgctgtcgaccgcggcggagttcgccgacgcg
gcgcgagcactcgcggcgggcgagggccccatcgccgtcgacaccgaacgcgcctccggc
taccgctattcgcagcgtgcgtatctgatccagatcaaacgacgcggtgccggcagcttc
ctgctcgaccccatcgccgatcccggggccctcgccccggtgatcgacgcattgcgcggt
cccgaatgggtgctgcatgccgccgatcaggacctcccgtgtctgcgcgagctgggtttc
gagtgcgtcgagctgtacgacaccgagttggccggtcgactcctcggcctggcgaaggtg
aacctggcggccatggtcgcccagttcctcggcctcggcctgctcaagggtcacggtgcg
gcggattggtcgcgacggcccctccccgacgaatggctgaactacgccgcgctcgacgtc
gaggttctggtcgagttgcgggacgcgatggacgcggcgctggccgaatccggcaaggac
ggctgggctcgtgaggaattcgcctacgtcctgtcccgtccgccggcaccgccacgcacc
gaccgatggcgcaagacctcgaacatccacaccgtgaagtccgcccgcgccctcgccgcg
gtgcgcgaattgtggatggcgcgtgaggaattggccgaacggcgggatgtcgccccgggc
cgggtgctgcccgacaccgcgatcgtgaacgccgccaccgccgacccccggtccaactcg
gagctgacccgcctgccgatcttcggcggtccccgccagcgacgccaggccgggatctgg
ctcagtgccctccaacgggcccgcgaactgcccgacaacgagttgccggcccgcaagacc
aacggccccggactgccaccggtgagtcgctgggaacagcgcaacccggaggccgcggcc
cggatgcagaaggtgcgtcccgctctcaaagaggtcgccgagagccgcaacctcccggtg
gagaacctcctcgcccccgatgtggtccgccagctgtgctgggacggactgcggaaaccg
gtcaccaccgaggcggtggacgcgcatctcgccgccgccggagcccgtccctggcagcgg
cggctgagcgtcgacgcgctgaccgaggccctgcgcgggggcggcgcgaccgagaccggc
gacggacccgaatag
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