Gordonia amicalis: IHQ52_18250
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Entry
IHQ52_18250 CDS
T08222
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gami
Gordonia amicalis
Pathway
gami03030
DNA replication
gami03430
Mismatch repair
gami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IHQ52_18250 (dnaE)
03430 Mismatch repair
IHQ52_18250 (dnaE)
03440 Homologous recombination
IHQ52_18250 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gami03032
]
IHQ52_18250 (dnaE)
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_18250 (dnaE)
Enzymes [BR:
gami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IHQ52_18250 (dnaE)
DNA replication proteins [BR:
gami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IHQ52_18250 (dnaE)
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IHQ52_18250 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
UKO90933
LinkDB
All DBs
Position
complement(3980446..3983991)
Genome browser
AA seq
1181 aa
AA seq
DB search
MTDSFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAIKND
IKPIIGIEAYIAPGSRFDTKRVQWGTREQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDADVIAQYAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEI
FGKENFYLELMEHGLEIERRVRDGLLDIGRKLGIKPIVTNDCHYVTKEHAAAHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAAEMREQWDSVVPGACDNTLEIGERVESYKDVFTHRDR
MPVFPVPDGETQQTFLRKEVAKGLQERRFAGTEVPQEYLDRANYELDVIIQMGFPAYFLV
VGDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDID
IDFDDRRRGEMVRYATERWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITK
ALPPPIMAKDIPVWGITNPEHERYGEAAEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
IKLNRGIDLDLDSLPLEDEKTYELLARGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQEIRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRNNGFSQAAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQRNFAAVGADIRFGLAAIRNVGSGVVGSIINAREEKGKFTSFSDYLGKIDVTACNKK
VTESLIKAGAFDSLGHPRKGLFLVHAEAVESVIGTKKAEAIGQFDLFGGGDDAADPGLAE
VFAVKVPEEEWDTKHKLAIEREMLGLYVSGHPLAGVEHAIAAHTDTSITSLLEGNISDGA
QITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAYVAYGMDIVADNIVLIKA
RVNLREDSMMISANDLAVPDLETAGATKPVALTLSARLCTPDRVQALKQVLTRHPGMADV
HVTLVSDKRQTQLKLTESLRVAPSSALMGDLKALLGPSCLG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgacggactcgtttgttcacctgcacaaccacaccgagtactcgatgctcgacggtgcg
gccaaggtgtcaccgttgttcgccgaggccaagcggctgggcatgaccgccatcggcatg
accgaccacggaaacatgttcggcgccagcgagttctacaacaccgcgatcaagaacgac
atcaagccgatcatcggcatcgaggcctacatcgcgccgggttcgaggttcgacaccaaa
cgcgtccagtggggcacgcgtgagcagaagagcgacgacgtctccggttcgggcgcgtac
acgcacatgacgatggtcgcggagaacgcgaccggcctgcgcaacctgttcaagctgtcc
tcgctcgcctccatcgagggtcagctcggcaagtgggcgcgtatggacgccgacgtgatc
gcccagtacgccgagggcatcatcgcgaccaccggctgcccgtccggtgaggtgcagacc
cgtctgcgtctggggcatgaccgtgaagccctcgaagccgcggcgaagtggcaggagatc
ttcggcaaggagaacttctatctcgagctgatggagcacggactcgagatcgagcgccgc
gtgcgcgacggtctcctcgacatcggccgcaagctcggcatcaagccgatcgtcaccaac
gactgccactacgtcaccaaggaacacgccgccgcccacgaggcgctgctgtgcgtgcag
accggcaagacgctgtccgacccgacccgcttcaagttcgacggcgacggctactacctg
aagtcggccgcggagatgcgcgagcagtgggactcggtggtcccgggcgcctgcgacaac
acgctcgagatcggtgagcgcgtcgagtcctacaaagatgtcttcacccaccgcgaccgc
atgccggtcttcccggtgcccgacggcgagacccagcagaccttcttgcgcaaggaggtc
gcgaagggactccaggagcgtcgtttcgccggtaccgaggtgccgcaggaatacctcgac
cgggccaactacgagctcgacgtcatcatccagatgggcttccccgcctacttcctcgtg
gtcggcgacctgatccgccacgccctcgaggtcggcatccgagtcggcccgggccgcggt
tcggcggccggctcgctggtcgcctgggcgctgggtatcaccaacatcgacccgatcccg
cacggactgctgttcgagcgattcctcaaccccgaacgcgtgtcgatgcccgatatcgac
atcgacttcgacgaccgtcgtcgaggcgagatggtgcgctacgcgacggagcgatgggga
agcgacaaggtcgcccaggtcatcaccttcggaacgatcaagacgaaggccgcgatcaag
gactccgcgcgagtccagttcggccagccggggttcgcgatcgccgaccgcatcaccaag
gcgctgccgccgcccatcatggccaaggacatcccggtctggggcatcaccaaccccgaa
cacgagcgctacggcgaggccgccgaggtccgcacgctcatcgagaccgacccggacgtc
aagaagatctacgacaccgcgctcggcctcgagggcctgatccgcaatgcgggcgtgcac
gcctgtgcggtgatcatgtcctcggagccgctgaccgacgcgatcccggtgtggaagcgc
gcccaggacggcgcgatcatcaccggctgggactacccgtcgtgtgaggccatcggactg
ctgaagatggacttcctgggtctgcgcaacctcaccgtcatcggtgacgccctggagaac
atcaaactcaaccgcgggatcgacctcgacctcgactcgttgccgctcgaggacgagaag
acctacgaactgctcgcccgcggtgacacgctcggcgtgttccagctcgacggcgcggcc
atgcgcgaactcctgaagatgatgcagccgaccgggttcgaggacatcgtggccgtcctc
gcgctgtaccggcccggtccgatgggtgtgaacgcacacaccgactacgccaagcgcaag
aacggtctccaggagatccggccgatccacccggagctcgaggaaccgctcaaggagatc
ctctccgagacctacggtctgatcgtctaccaagagcagatcatgcagatcgcgcagaag
gtcgccggctactcgctcggacaggcagacctgctccgtcgcgcgatgggcaagaagaag
aaggagatcctcgacgaggcctacgacggcttcgcggagggcatgcgcaacaacggattc
tcgcaggcggcgatcaccgcgctgtgggacacggtgttgccgttcgccggttacgcgttc
aacaagtcgcacgccgccggctacggcctcgtctcgttctggaccgcctacctcaaggcg
aactatcccgccgagtacatggccggtctgctcacctccgtcggcgacgacaaggacaag
gcggccatctacctcgccgactgccgcaagctgggcatcacggttctgccgccggacgtc
aacgagtcgcagcgcaacttcgcggccgtcggcgccgacatccgcttcggtctcgccgcg
atccgcaacgtcggttcgggcgtggtcggctcgatcatcaacgcccgtgaggagaagggg
aagttcaccagcttctccgactacctcggcaagatcgacgtcaccgcctgcaacaagaag
gtgacggaatcgctgatcaaggccggcgcgttcgactcgctcggccacccgcgcaagggg
ctgttcctcgtgcacgccgaggccgtcgaatcggtcatcggcaccaagaaggccgaggcg
atcggtcagttcgacctgttcggcggaggggacgacgccgcggatcccggactggccgag
gtcttcgcggtcaaggtgcccgaggaggagtgggacaccaagcacaagctcgcgatcgag
cgggagatgctgggtctctacgtctccgggcacccgctggccggcgtcgaacacgccatc
gccgcgcacaccgacacctcgatcacgtcgctgctggaaggcaacatctccgacggtgcc
cagatcaccatcggcggcatcatctcgtcggtgacgcgccgggtgaacaagaagggggag
ccgtgggccgcggtcaccctcgaggacatggtcggtggcgtcgaggtctacttcttcccg
cgcgcgtacgtggcgtacgggatggacatcgtggccgacaacatcgtgctgatcaaggcc
cgggtcaacctgcgtgaggacagcatgatgatcagcgccaacgacctggccgttcccgat
ctggagaccgcgggagccaccaaaccggtcgcactgacactgtccgcgcgactctgcacc
cctgatcgggtccaggcgctcaagcaggtactcacgcgccatccggggatggcggacgtg
catgtgacgctcgtcagcgacaaacgacagacgcagctcaagctgaccgagtccctacgt
gtggcgccgagttcggccttgatgggcgacctgaaagcgctgctgggaccgagctgcctg
ggctga
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integrated database retrieval system
