Gordonia amicalis: IHQ52_19535
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Entry
IHQ52_19535 CDS
T08222
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
gami
Gordonia amicalis
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gami03032
]
IHQ52_19535
03036 Chromosome and associated proteins [BR:
gami03036
]
IHQ52_19535
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_19535
DNA replication proteins [BR:
gami03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
IHQ52_19535
Chromosome and associated proteins [BR:
gami03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
IHQ52_19535
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
IHQ52_19535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-DNA_bdg
HC2
Motif
Other DBs
NCBI-ProteinID:
UKO91160
LinkDB
All DBs
Position
complement(4250304..4250924)
Genome browser
AA seq
206 aa
AA seq
DB search
MNKAELIDELTKKLDADRKTATEAVELVVDTIVRAVNKGESVTITGFGVFEKRKRAPRVA
RNPRTGETVKVRATSVPAFRPGAQFKAVVAGKQKLAATGPAVKRGSGTTAAKKAAPAKKT
AAKKAAPAKKTAAKKAPAKTTAAKKTTAAKKTTAAKKTAPAKKTTTAAKKAAPAKKAAPA
KKTAAKKAPAKKAAAKKAPAKKSTRR
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggcggagctcattgatgagctgaccaagaagctcgacgcggatcgcaagact
gcgactgaagccgtcgagctcgtcgtcgacacgatcgttcgcgcggtcaacaagggcgag
agcgtgacgatcaccggcttcggtgttttcgagaagcggaagcgtgcgccgcgcgtcgct
cgcaatccgcgcaccggcgagaccgtgaaggtccgtgctacttcggttcccgcgttccgt
ccgggtgctcagttcaaggccgtcgtggccggcaagcagaagctcgccgccaccggtccg
gctgtgaagcgcggcagcggcaccacggcggccaagaaggctgctccggccaagaagacc
gcggccaagaaggctgctccggccaagaagaccgcggcgaagaaggctccggccaagacc
acggcggccaagaagaccaccgcggcaaagaagaccacggcggccaagaagaccgcgccg
gccaagaagaccacgaccgcggcgaagaaggccgctccggccaagaaggctgctccggcc
aagaagaccgcagccaagaaggctccggccaagaaggccgcggcgaagaaggctccggcc
aagaagtcgacgcgccgctga
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