KEGG   Gallibacterium anatis: UMN179_01960
Entry
UMN179_01960      CDS       T01482                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
gan  Gallibacterium anatis
Pathway
gan02024  Quorum sensing
gan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UMN179_01960
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    UMN179_01960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gan03019]
    UMN179_01960
   03036 Chromosome and associated proteins [BR:gan03036]
    UMN179_01960
Messenger RNA biogenesis [BR:gan03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     UMN179_01960
Chromosome and associated proteins [BR:gan03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    UMN179_01960
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AEC17973
UniProt: F4HE12
LinkDB
Position
complement(2116832..2117107)
AA seq 91 aa
MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARAISHHNHQANAVNQEEDAVVTNEEE
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcaaaaggacaatcattacaagatccttatttaaacgcacttcgtcgtgaacgtatt
cctgtttcaatctacctcgtaaacggcattaagttgcaaggtcaaatcgaatcattcgac
caatttgttatccttcttaaaaatactgtaagccaaatggtatataaacacgctatttct
actgttgtccctgcacgggcaatttctcatcataatcatcaagcaaatgcagtcaatcag
gaagaagatgctgttgtaacaaacgaagaagagtaa

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