Gilliamella apicola: GAPWK_1332
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Entry
GAPWK_1332 CDS
T03066
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gap
Gilliamella apicola
Pathway
gap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GAPWK_1332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gap03019
]
GAPWK_1332
Enzymes [BR:
gap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GAPWK_1332
Messenger RNA biogenesis [BR:
gap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GAPWK_1332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHN25909
LinkDB
All DBs
Position
1443198..1444502
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AA seq
434 aa
AA seq
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MSFDSLGLDAEILKAIHEQNYTEPTPIQQQAIPVILSGKDLMASAQTGTGKTAGFGLPIL
QKLVEQQAKANNHSQPKKGKRPLYALILAPTRELAAQIGENIRDYSRYLPIRSLIVFGGV
SINPQMMKLRGGVDILIATPGRLLDLVHQNAVDLSSVKVLVLDEADRMLDMGFIHDIRRV
IAKLPKKRQNLMFSATFSDEIKALAQTILKSPESVAVAKTNSASEQITQYVHRVDKRRKR
ELLSYLIGKNQWQQVLIFTRTKYGANHLAEQLTKDGIKASAIHGNKSQGARTKALADFKN
GQIRALVATDIAARGLDIELLPYVVNYELPQVAEDYVHRIGRTGRAQNQGQAISLVCIDE
LAQLKSIEKLIKKPIPEIFTQGFEVDPRIKAEPVKKAIAKGAPAKRRRVDKTRTSKNNQN
SMKQSSHHTYSKTN
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgactctcttggcttagatgccgagattttaaaagcaatccacgaacaaaac
tacaccgaacccacacccattcaacaacaagctatcccagttattttatcaggtaaagat
ctaatggccagtgctcaaacagggacgggcaaaacagctggctttggcttaccaatttta
cagaagttagttgaacaacaagcaaaagcaaataatcattctcaacctaaaaaaggcaaa
cgtccattatatgctttgatcttagctccaacacgtgaattagcagctcaaattggagaa
aatattcgtgactacagccgatatttaccgattcgttctttaatcgtgtttggtggcgta
agcattaatcctcaaatgatgaaactacgcggtggcgtcgacattttaattgcaactcct
ggtcgtttactcgatttagtgcatcaaaacgcagtagatttgtcatcggttaaagtgtta
gtattggatgaagccgatcgtatgttagatatgggttttattcacgatattcggcgcgtg
attgcaaaattacctaaaaaacgtcaaaatttaatgttttcggcgactttttcagatgag
ataaaagctttagcgcaaaccattttaaaatcacctgaatctgttgctgtggcaaaaacg
aatagtgcatcagaacaaattacccagtatgtgcatcgggtagataagcgtcgtaaacgt
gaattgctctcttatttgattggtaaaaaccaatggcaacaggtattaatttttaccaga
accaaatatggagctaaccatctcgctgaacagctaaccaaagatggtattaaagcttca
gcgattcatggtaataaaagtcaaggcgctagaactaaagctttggcggactttaaaaat
ggtcaaattagggcattggtggcaactgatattgctgccagaggtttagatattgaacta
ttgccttacgttgtcaattatgagctaccacaggtggcagaagattatgtgcatcgtatt
ggtagaacagggcgagctcaaaatcaggggcaagcgatatcattagtttgtattgatgag
cttgctcaattaaaatcaattgaaaaattgattaaaaaaccgattccagaaatttttact
caaggatttgaagtcgatcctcgaattaaagcggagccggtaaaaaaagcgatagcaaag
ggtgctccagcaaaaagaagacgtgttgataaaacgcggacttccaaaaataatcagaat
agtatgaagcaatctagccatcatacatattctaaaactaactaa
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