Gilliamella apicola: GAPWK_1554
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Entry
GAPWK_1554 CDS
T03066
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gap
Gilliamella apicola
Pathway
gap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GAPWK_1554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gap03400
]
GAPWK_1554
Enzymes [BR:
gap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GAPWK_1554
DNA repair and recombination proteins [BR:
gap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GAPWK_1554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHN26129
LinkDB
All DBs
Position
1680306..1683764
Genome browser
AA seq
1152 aa
AA seq
DB search
MSKTPNISTLIPKKSGEVKQIGQLIGSSLSQFCAQSIDAHDGLVVIITDDMQQTTRIHEE
LRQFSPHPAIFFPDWETLPYDSFSPHQDIVSERLSCLYHLGHLTKGALILPINTLMQKVC
PQSYLGGHVFIMKKGLQISRENLRLQLENAGYRSVSQVMEHGEYATRGALFDIYPMGSDK
PYRIDFFDDEIDSIRTFDVESQRTLDEIPEIQLLPAHEFPFDKTAIELFRSQWRERFPVR
LEPESIYQQVSKNILPTGIEYWQALFFNESLTPLFSYFSANTLIINTINIESNANKFWQD
INQRYDSRKVDPMRPLLEPVIIWSKTDEIFADFKKYPRLVLSHEIISESNKNVNLAYSNL
PDLAVAIQQKDPYLQFHQFIENFTGKIVFSVESEGRKEALQEILGRIRIHPITINQLDEI
HHVNERFCIILGASEQGFINQSDNFAFITENELLGRRIVRRKKENKQAINTDTLIRSLAE
LTPGKPVVHLEHGVGRYAGLTTLETGGIYAEYLILLYANDTKLYVPVSSLNLISRYSGGD
EENAPLNKLGTDAWSKARQKAAEKVRDVAAELLDIYAERESKPGFEFKQDREQYELFCEA
FPYQETEDQQNAIGAVIGDMCSPYAMDRLVCGDVGFGKTEVAIRAAFLSVINHKQTAVLV
PTTLLAEQHYENFCDRFANWPIRIESLSRFKTAKQQQAIIQALSEGKVDIVIGTHKLLQE
DVKWKDLGLLIVDEEHRFGVRQKERIKAMRANIDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFVREYDDLVIREAILREILRGGQIYYLHNDVSDIEKVSEKLAELVPEA
RIAIGHGQMHERDLERVMNDFHHQRFNLLVCTTIVETGIDIPNANTIIIERADKFGLAQL
HQLRGRVGRSYHQAYAYLLTPHPKLLSKDAKKRLEAIASLEDLGAGFALATHDLEIRGAG
ELLGSDQSGQIETIGFNLYIELLDDAVKSLKEGKEPTLESLLNNQQTEVELRLPTLIPDD
FIPDVNTRLSLYKRIASIEAIDELTDIQIEMRDRFGKLPDAVLFLLETTKIRYQANKLGI
TKIEFGEKGGFIEFGKNNKISVDYLIEMIQKSPKNYRLEGANRLKLLSSYLDRSDRIEYI
KNLLADFSNHQE
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaactcctaatatttcaacattaattcctaaaaaatcaggtgaagtcaaacaa
attgggcaattaatcggatcatctctatcccaattttgtgctcaatccattgatgcacac
gatggtttagtggtgattattacagatgatatgcaacaaacaacccgtattcatgaagaa
ctaagacaattttcacctcatcctgctatctttttccctgattgggaaacactgccttat
gatagtttttcaccgcatcaagatatagtctctgagcgtctatcttgtctttatcattta
ggacatttgactaagggtgctttgattttaccgattaataccttaatgcaaaaggtctgc
ccacaaagctatttgggcgggcatgtgtttatcatgaaaaaaggcctacaaattagccgc
gaaaacttacgtttacaacttgaaaatgcaggttatcgctctgtcagtcaagtgatggaa
catggcgaatatgcaactcgtggtgctctttttgatatttatcctatgggcagtgataaa
ccctatcgtatcgatttttttgatgacgaaatagatagcattcgtacatttgatgttgaa
tctcaacgcacacttgatgaaatacctgaaatacagttattgccagctcatgaatttcca
tttgataaaactgctatcgagctttttagaagccaatggcgtgaaagatttcctgtcaga
ttagagcccgagagtatttatcaacaagtcagtaaaaacattttaccaacaggtatagag
tattggcaggctctgttttttaatgagtcattaactccgctgttttcatatttttcagct
aacacactcattattaacaccatcaatattgagtctaacgccaataaattttggcaagat
attaaccaacgttatgatagtcgcaaggttgatcctatgcgaccattattagagccagta
atcatttggtcaaaaaccgacgaaatatttgccgatttcaaaaaatacccaagactggtc
ttatctcatgaaattatcagtgaatcaaataaaaatgttaatttggcttattcaaatttg
cctgaccttgcggttgcaattcaacagaaagatccttatttgcaattccatcaattcatc
gaaaatttcacaggtaaaattgtcttttcggtcgaatcagaaggtcgtaaagaagcgtta
caagaaattttaggacgaattcgtattcatccaataacgattaatcaacttgacgaaata
catcatgttaatgaacgcttttgtataattctaggtgctagtgagcaaggttttattaat
caatcggataattttgcttttattactgaaaatgaactattgggtcgccgaattgttcgt
cgcaaaaaagaaaataaacaagcaattaataccgacacactaattcgtagtttagctgaa
ttaacaccaggcaaacctgtggtacatttagagcatggagtgggacgatatgctggttta
accacacttgaaacaggtggcatttatgcagaatatttgatcttactttatgcgaatgat
actaagctatatgtgccagtatcatctttaaatttaatcagtcgttactcaggtggggat
gaagaaaacgctccactgaataaacttggcactgatgcatggagtaaagctagacaaaaa
gcggccgaaaaagtacgggatgtcgcagccgaattacttgatatttatgctgaacgagaa
agcaaaccaggttttgaatttaaacaagatcgagagcaatacgaactattttgcgaagct
tttccttatcaagaaacagaggatcaacaaaacgcaattggtgcggtaattggcgatatg
tgttcaccttatgcgatggatagattggtttgtggtgatgttggttttggtaaaactgaa
gtcgctattcgagcagcatttttatcggtaataaaccataaacaaaccgctgttttagtc
ccaacaaccttacttgccgaacaacattacgaaaacttttgtgatcgcttcgctaactgg
ccaatacgtattgaaagcttgtcacgattcaaaacagctaaacaacaacaagctattatt
caagctttgagtgaaggtaaagtagatattgtaattggtacacataaactattacaagaa
gacgtaaaatggaaagatttaggattattaattgtcgatgaagaacaccgttttggcgtt
cgccaaaaagaacgaatcaaagcgatgcgagccaatattgatatattaaccctaacggcc
acacctattccacgaacacttaatatggcaatgagcggtatgcgggacctctcaattatt
gctacaccaccagcacgacgtttagcggttaaaacctttgtacgcgaatatgacgatctg
gttattcgagaagcaattttacgtgaaatcttacgtggaggtcagatctattacttacat
aatgatgtttcagacattgaaaaagtaagtgaaaaacttgctgaactggttccagaagca
cgtattgctattggtcatggtcagatgcatgagcgtgacttggaacgagtcatgaatgat
tttcatcatcaacgctttaatttactggtatgtactacaattgtcgaaacggggattgat
attccgaacgctaatactatcattattgaacgagccgataaatttggtttagctcagtta
catcagttgcgaggtcgtgtaggtcgttcttatcatcaggcttatgcctacttattaacg
ccacatcctaaattactcagtaaagatgctaaaaagcgtctagaagcaattgcatcactt
gaagatttaggcgcaggttttgctttggcaacacatgatcttgaaattcgtggtgctggt
gaattattgggtagtgatcaaagtggtcaaattgaaaccattggctttaatctttatatt
gaattacttgatgacgcggttaaatcacttaaggaaggtaaagaacctacccttgaatcg
ctccttaataaccagcaaaccgaagttgaattacgtttgccgacattgattcctgatgat
tttattcctgatgttaatacccgattgtcattatataaacgtattgctagtattgaagca
attgacgaattaacagatatacaaatcgaaatgcgagatcggtttggtaagctacccgat
gccgtactatttttattagaaacaaccaaaatccgttatcaggcaaacaaattagggatc
actaaaattgaatttggtgaaaaaggtggttttattgaatttggtaagaacaataaaatt
tcagtcgactatttaattgaaatgattcaaaaatcaccaaaaaattatcgccttgaaggc
gcaaatcgattaaaattgttgagttcatatctggaccgaagtgatcgtattgaatatatt
aaaaatttgttggctgatttttcaaaccaccaagagtaa
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