Gilliamella apicola: GAPWK_2036
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Entry
GAPWK_2036 CDS
T03066
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gap
Gilliamella apicola
Pathway
gap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GAPWK_2036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gap03019
]
GAPWK_2036
03009 Ribosome biogenesis [BR:
gap03009
]
GAPWK_2036
Enzymes [BR:
gap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GAPWK_2036
Messenger RNA biogenesis [BR:
gap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GAPWK_2036
Ribosome biogenesis [BR:
gap03009
]
Prokaryotic type
rRNA helicases
GAPWK_2036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
DRTGG
Cas3-like_C_2
CRAL_TRIO_N
Motif
Other DBs
NCBI-ProteinID:
AHN26609
LinkDB
All DBs
Position
complement(2271606..2273375)
Genome browser
AA seq
589 aa
AA seq
DB search
MTKEISFIDLGLSEDILNALNDLGFSKPSPIQTECIPLLLAGNDVLGMAQTGSGKTAAFS
IPFLMNIDANLKAPQLLVLAPTRELAIQVADACAEYSKYMKGIKVLALYGGQRYDVQLRA
LKQGPQIVVGTPGRLLDHLNRKTLDLSNLKGLVLDEADEMLRMGFIDDVESIMATIPEDH
QTALFSATMPAPIRRITKRFMHNPKEVQIKGTNQTAPDIEQSYWLVRGMRKNEAIVRFLE
AEDFDAAIIFVRTKSATLDVAEVLEKHGYSCAALNGDMTQQLREQTLDRLRNGRLDILIA
TDVAARGLDVERISLVINYDITLDSESYVHRIGRTGRAGRAGRAILFVDSRERRLLKNIE
QTIKKPIPEVGLPSKELLEARRLAKFTEQVQKQLESSDLPQYQTLLAQIQADSGADLETI
ATALLKLAQGERPLILPPDPVFKPSREMRDRDNRGGERRLRGDNRETPKRRERRDVGEMD
MYRIEVGKENGVEVRHIVGAIANEADISSRYIGNIKLYETYSTVELPKGMPKDILKHFEK
VRVLNQPMKMSLVSGNTSETKRGRKSTKSDAGDNKSSPKKRGRPAAPKF
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaaatttcttttattgaccttggtttatctgaggatatccttaacgcatta
aatgatcttggttttagcaaaccatcaccaatccaaactgaatgtattcctctattatta
gcaggcaatgatgtattgggtatggcacaaacaggtagtggtaaaaccgctgcattttca
atccctttcttaatgaatattgatgcaaatctaaaagcaccacaacttttagttctagca
ccaacgcgtgaacttgccattcaagttgctgatgcttgcgcagaatattcaaaatatatg
aaagggataaaagtattagcattatatggcggtcaacgttatgacgttcaattgagagca
ttaaaacaagggcctcaaattgtggttggtacacctggacgtttacttgatcatttaaat
cgtaaaacgttagatctttctaatcttaaagggttagtacttgatgaagctgatgaaatg
ctaagaatgggctttattgatgatgttgaaagcatcatggcgacaatacctgaagatcac
caaacagcactattttcagcgacaatgccagcgccaattcgtcgtattactaaacgattt
atgcataatcctaaagaagtacaaatcaaaggcactaaccaaactgcaccagatatcgaa
cagagctattggcttgttcgtggtatgcgaaaaaatgaagcgattgttcgctttttagaa
gctgaagattttgatgcagcaattatttttgttcgtacaaaatcagcgacattagatgtt
gcagaagtgctcgaaaaacatggttatagctgtgctgctttaaacggtgatatgacacaa
caattacgtgaacaaacattagatcgattacgtaatggtcgtttagatattttaattgca
accgatgttgcagctcgtggtttagatgttgagcgtatcagcttagttatcaattatgat
attaccttagattcagagtcttatgttcaccgtatcgggcgaacagggcgagcagggcgt
gcaggtcgtgcaattttatttgttgatagccgcgaacgtcgtttacttaaaaatattgag
caaacaattaaaaaaccaattcccgaagtgggcttgccgtcaaaagagctccttgaagca
cgtcgcttagcgaagtttactgaacaagttcaaaaacaacttgaaagtagtgatttacca
caatatcaaactttgttagcgcaaatacaagctgatagcggtgctgatcttgaaacgatt
gctacagcgttattaaaattagctcaaggtgaacgcccattaattttaccaccagaccca
gtatttaagccgtcacgtgaaatgcgcgatcgtgataatcgtggaggtgagcgccgttta
cgtggtgataatcgtgaaacgccaaaacgtcgagaacgccgtgatgttggtgaaatggat
atgtaccgtattgaagtgggtaaagaaaacggtgttgaagtacgtcatattgttggtgca
attgcaaatgaagcagatatcagtagtcgttacattggtaatattaagctctatgaaact
tactcaacagttgagttaccaaaaggcatgccaaaagatatcttaaaacattttgaaaaa
gtaagagtacttaaccaaccaatgaaaatgagcttagttagtggtaatacttcggaaact
aagcgtggtcgtaaaagtactaaatctgatgcaggtgataacaaaagttcacctaaaaaa
cgtggtcgtccagcagcgccgaagttttaa
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