Gilliamella apicola: GAPWK_2038
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Entry
GAPWK_2038 CDS
T03066
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gap
Gilliamella apicola
Pathway
gap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GAPWK_2038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gap03019
]
GAPWK_2038
03016 Transfer RNA biogenesis [BR:
gap03016
]
GAPWK_2038
Enzymes [BR:
gap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GAPWK_2038
Messenger RNA biogenesis [BR:
gap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GAPWK_2038
Transfer RNA biogenesis [BR:
gap03016
]
Prokaryotic type
tRNA degradation factors
GAPWK_2038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_PDCD11
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
aRib
DUF3016
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AHN26611
UniProt:
X2HAI3
LinkDB
All DBs
Position
complement(2274612..2276726)
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AA seq
704 aa
AA seq
DB search
MFNPTNQKFQYGRHTVTLETGIMARQATAAVMVNMDDTAVFVTVVADKKVKEGQDFFPLT
VNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPLRPLFPEGFVNEIQIIATVVSV
NPDVSPDLVAMIGASAALCLSGVPFHGPIGAARVGFINDEFVLNPSVKELATSRLDLVVA
GTKSAVLMVESEADLLTEDQMLAAVVFGHDQQQVVIDNINEFVAKANCEKWDWVAPVKDE
ALYNAVSELAKDRLGEAYRITEKQARYAQIDSIKEDVLAALKAQDEELDENKVINIIVDL
ESQIVRQRVIAGEPRIDGREKDMIRALDIRTNVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELTGEYTERFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVAAVMPSIEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSSVAGIAMGLVKEGDKFVVLSD
ILGDEDHLGDMDFKVAGTRDGVSALQMDIKIEGITKEIMQIALNQAKGARLHILGVMEQA
INKPRQEISEFAPRIYTMNVNPDKIRDIIGKGGATIRALTEETGTTIEITDDGTVKIAAS
DSNKAKNAMERINNLVADVELGKIYTGKVTRIVDFGAFVSIIGGKEGLVHVSQIADHRVE
KVSDYLKVGQEVNVKVLEIDRQGRIRLSMKDAVEQTTETAQITE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaatccgacaaatcaaaaatttcaatatggtcgtcataccgttactctagaaaca
ggcattatggctcgtcaagcaactgctgctgtaatggttaatatggatgacacggctgta
tttgtaactgttgttgctgataagaaagttaaagaaggtcaagatttctttcctttaaca
gttaattaccaagagcgtacttatgctgctggacgtattccaggtggattttttaaacgt
gaaggtcgcccaagtgaaggtgaaactttaattgcccgtttaatcgaccgtccacttcgt
cctttatttccagaaggttttgttaatgaaattcaaatcattgcaacagttgtatcggtt
aatccagatgttagccctgatttggttgcgatgatcggtgcttctgctgcactttgccta
tcaggcgtgcctttccatggaccaattggtgctgcgcgtgtaggctttattaatgatgaa
tttgttttaaatccatctgtaaaagaactagcaacaagtcgtttagatttagtggttgcc
ggtactaaaagtgcggtattaatggttgaatctgaagcggatttattaactgaagatcaa
atgttagcagctgtcgtatttggtcatgaccaacaacaagttgtaattgataatattaat
gagtttgttgccaaagctaattgcgaaaaatgggattgggttgcaccagttaaagatgaa
gcgctttataatgccgtttctgaactagcaaaagatcgtttaggtgaagcttatcgaatc
actgaaaaacaagcgcgttatgcccaaattgattcaattaaagaagatgtgctagcagca
cttaaagcacaagatgaagaacttgatgaaaacaaagtcatcaatattattgttgattta
gaaagtcaaatagtacgtcaacgcgtcattgctggtgagccacgtattgatggtcgtgaa
aaagatatgattcgtgcgcttgatattcgtacaaatgtattaccaagaacacatggtagt
gcactatttactcgtggtgaaactcaagcattagtaacagctactttaggtactgaacgt
gatgctcaaattattgatgagttaactggtgaatatactgaacgctttttattacattat
aacttccctccatattctgttggtgaaacgggtatggttggttcgccaaaacgtcgtgaa
attggtcatggtcgtttagctaaacgcggtgttgcagcagtaatgccaagtattgaagaa
ttcccttatactgttcgagttgtttctgaaattacggaatctaatggttcatcttcaatg
gcttctgtatgtggtgcatcattagctcttatggatgcaggtgtaccaattaaatcatct
gtagctggaatcgcaatgggactagtgaaagaaggtgataaatttgtcgttttatctgat
attttaggtgatgaagatcatcttggcgatatggactttaaagtagctggtactcgtgac
ggtgttagtgcattgcaaatggatatcaagattgaaggtatcactaaagaaattatgcaa
attgcccttaatcaagcaaaaggtgctcgtttacacattttaggtgtgatggaacaagct
attaataaacctcgccaagagatttcagaatttgcaccacgtatttataccatgaatgtc
aatccggataaaattcgcgatatcattggtaaaggtggcgcaaccattagagccttgacc
gaagagacaggcacgactattgaaatcacggatgatggtactgttaaaattgctgcttca
gatagtaataaagcgaaaaatgcaatggagcgaatcaacaatttagttgcggatgttgaa
cttggtaaaatttatacaggtaaagtaacacgaattgttgattttggtgcttttgtatca
attattggtggtaaagaaggtcttgtccatgtatcacaaattgcagaccatcgcgttgaa
aaagtttctgattatctaaaagtcggacaagaggtaaatgttaaagtcttagaaattgat
cgacaaggtcgaattcgtttgagcatgaaagatgctgttgaacaaacaacagaaacagct
cagattaccgaataa
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