Gilliamella apis: RAM11_01525
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Entry
RAM11_01525 CDS
T09380
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gaq
Gilliamella apis
Brite
KEGG Orthology (KO) [BR:
gaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaq03016
]
RAM11_01525
Enzymes [BR:
gaq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RAM11_01525
Transfer RNA biogenesis [BR:
gaq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RAM11_01525
Prokaryotic type
tRNA splicing ligases
RAM11_01525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLT06833
LinkDB
All DBs
Position
complement(316377..317597)
Genome browser
AA seq
406 aa
AA seq
DB search
MTQYHLLQTENAKPIKMWTEGVPVDQGAKDQLSKTAQLPFIFKHIAVMPDVHVGKGSTIG
SVIPTMGAIIPAAVGVDIGCGMIAVQTSLMATDLPDNLLPLRTEIEKAVPHGISPKNHKQ
DNGSWHNPPTLIDQYWQQLLPGFQKLIDKYPHLENTNNYRHLGTLGTGNHFIEICLDEAD
RVWIMLHSGSRGVGNAIGRFFIEMARKDMEVHIKNLPDRDLAYLEEGTEHFQDYVDAVHW
AQEFARLNREAMMTNVILAMRKIITKPFTTHMSAINCHHNYVQKEHHFGEEIFVTRKGAV
SARKGELGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRVMSRTEAKKKFTIADQIKATA
HVECRKDANVIDEIPMAYKDIDAVMTAQNELVEIVHQLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgactcaatatcatttattgcaaaccgaaaatgccaaaccgattaagatgtggacagaa
ggagtaccagttgatcaaggagctaaagaccaattaagcaaaacagcacaacttcctttt
atttttaagcatattgctgtaatgcctgatgttcatgttggtaaaggttcgactattggt
agcgtaatcccaacaatgggcgccattattcctgctgccgtcggtgtggatattggttgc
gggatgatagccgtacaaacatcattaatggcaacagatttaccagataatttattacca
ttaagaaccgaaatagaaaaagcggtaccacatggtatctcgcccaaaaatcataaacaa
gataatggtagttggcataatccaccgactttgatcgaccaatattggcaacaattatta
ccaggttttcagaagttaattgacaagtatcctcatttggaaaataccaataactatcga
catctaggaacacttggtacaggtaaccattttatcgaaatctgtttagatgaagccgac
cgagtttggatcatgttacatagtggatcgcgtggtgtaggtaatgccattggccgcttt
tttattgagatggccagaaaagatatggaagtccatataaaaaatctaccagatagagat
ttagcttacttagaagaaggtactgaacattttcaggattatgtcgatgccgttcattgg
gcacaagagtttgctcgacttaaccgtgaagcaatgatgaccaatgtgattttagctatg
cgtaaaattattactaaaccatttacaacacatatgtcggcaattaactgtcaccataat
tatgtgcaaaaagagcaccattttggtgaagagatctttgttactcgtaaaggagcagtt
tctgcccgtaaaggggaattagggattattccaggctcaatgggagcgaaaagctatatt
gttcgcggactgggaaatgaagaaagcttttgctcttgttctcatggtgctggacgggtt
atgagtcgcacagaagcgaaaaagaaatttaccatcgcagatcaaattaaagcaactgca
catgttgaatgtcgtaaagatgccaatgttattgatgaaattccaatggcatataaagat
attgatgctgtaatgacggcacaaaatgaattagttgagattgttcatcaactacgacaa
gtggtctgtgtgaaaggataa
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