Gilliamella apis: RAM11_04535
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Entry
RAM11_04535 CDS
T09380
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gaq
Gilliamella apis
Brite
KEGG Orthology (KO) [BR:
gaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaq03016
]
RAM11_04535
Enzymes [BR:
gaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RAM11_04535
Transfer RNA biogenesis [BR:
gaq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RAM11_04535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF6563
Motif
Other DBs
NCBI-ProteinID:
WLT07396
LinkDB
All DBs
Position
complement(965808..967748)
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AA seq
646 aa
AA seq
DB search
MFQNNPLLAQLKQEFAEQKPHVEGIVRAHEKGFGFLDVDNKTNYFIPVAKMKQLCHGDKV
SGTIISNNDKESFEPEILIESSLQKFIGKIGFLDRAMVIYPENMPTKFAIRCQVNTEVKQ
KLTEGDWVVATLQSHPLQKDKQQFLAQVTQFIASSDSIYQLWLKTLARYQLEDNAPQAES
FIISESEQQNRQDLTNVSFFTIDNENTEDMDDAIAICQDEMGNYNLMIAIADPTAYILPD
SELDNIAKVRNFTTYLPDFNIPMLPKQLADDLCSLKANQKRPAMVCKIHLDKTGQFTADD
IHFTPAWIESKAKLCYNNVSNFLENQSDLNFANTEIKTQLKLLADLAKVRINWRQQNALI
FKANNDYRFVLDDNRQVQSILKEERGIANNIVEEMMIIANLALTLYLTEKIGTGVFNTHS
GFDSKYIEQILKILVDNGISDFDKESLTSFEGYIRLRRLIDNNDFLSTKLRKFQSPADFS
ITPQPHYGLGFLAYATWTSPIRKYGDMINHRLLKASLKQQPFPAPTNEQLESMADRRKKL
RLAERDIAENLYSQYLYDKQEQCFTAEIVDINRGGARVRLTEIGAFAFLPLSMIHNARDE
ITLNIDEGSIKIKDELILKLADKLSVVIHQVKIENHSIIVKIGENK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataacccattactcgcccaacttaaacaagaatttgcagaacaaaaacct
catgttgaaggtatcgtccgagcacacgaaaaaggatttggttttttagatgttgataat
aaaacaaattattttattcctgttgccaaaatgaagcagctttgccatggagataaagta
tcgggaaccatcatcagcaataatgataaagagtcatttgaacctgaaatattaattgaa
agtagcttacaaaaatttattggtaaaatcggctttttagatcgcgctatggtgatttat
cctgaaaatatgccaactaagtttgccatacgttgtcaagttaacacagaagttaagcaa
aaattaactgaaggtgattgggttgtggcaacattacaatcgcatccattgcaaaaagat
aaacaacaatttcttgctcaagtaacacaatttatcgcaagctctgactctatttatcaa
ttatggttgaaaaccttagctcgttaccaattagaggataatgccccccaagctgaatca
ttcatcatttctgaaagtgaacaacaaaatcgacaagatttaaccaatgtgtcgtttttc
actattgataatgaaaataccgaagatatggatgatgcgattgctatttgccaagatgaa
atgggtaattataacttaatgatagccattgccgatcctacggcctatattttacctgat
agtgagctggataatattgccaaagttcgtaattttacaacttatctgcccgattttaat
attccaatgttacctaaacaattggctgatgacctatgctcattaaaagccaatcaaaaa
cgcccagcaatggtatgtaaaattcacctagataaaacgggacaatttacagctgatgat
atccatttcactccagcttggattgaatccaaagctaagctttgttataacaatgtttct
aatttccttgaaaatcaaagtgatttaaattttgctaacacagaaatcaaaacccaattg
aaattgttagctgatctagcaaaagttcgtatcaattggcgacaacaaaatgcgttaatt
tttaaagcaaacaatgattatcgatttgtacttgatgataatcgccaagtgcaatcaatc
cttaaagaagaacgaggcatcgccaataatatcgttgaagaaatgatgattattgctaat
ttagctttgaccttatatttaacagaaaagattggtaccggcgtctttaatactcattca
ggctttgatagtaagtacattgaacaaattttaaaaatattagttgataatggcatttct
gattttgataaagagtcactaacttcatttgaaggatatattagattacgccgattaatt
gataataacgattttctatcaactaaattgcgtaaattccaaagtcctgctgatttttcg
ataacgccacaaccccactatggtttgggctttttggcctatgccacttggacttcacca
attcgcaaatatggtgatatgataaaccatcgtttacttaaagcttctcttaaacagcaa
ccattccctgcaccaactaacgaacaattagaaagtatggcagatcgtcgtaagaaatta
cgtttagctgaacgagatatcgccgaaaatctttatagccaatacttatacgataaacaa
gagcaatgttttactgctgaaatagttgacattaatcgaggaggggcccgagttcgatta
acagagataggcgcattcgcatttttaccactatcaatgattcataacgctcgtgatgaa
ataaccttaaatattgatgaaggttcaattaaaattaaagatgaactgatacttaaacta
gctgacaaactatcagttgtgatccatcaggttaaaattgaaaaccactcaattattgta
aaaatcggtgaaaataaataa
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