Glutamicibacter halophytocola: AOZ07_06510
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Entry
AOZ07_06510 CDS
T04229
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gar
Glutamicibacter halophytocola
Brite
KEGG Orthology (KO) [BR:
gar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gar03019
]
AOZ07_06510
Enzymes [BR:
gar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOZ07_06510
Messenger RNA biogenesis [BR:
gar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOZ07_06510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
WHD_HA2
AAA_19
AAA_22
nSTAND3
ABC_tran
T2SSE
SLFN-g3_helicase
nSTAND_NTPase5
AAA_30
AAA_16
PhoH
ResIII
UvrD-helicase
Myosin_head
TsaE
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
ALG28675
LinkDB
All DBs
Position
complement(1395239..1399177)
Genome browser
AA seq
1312 aa
AA seq
DB search
MALSITYPEALPVSSRRADILKAVRENQVVVIAGETGSGKTTQLPKMLIELGLAEQGMIG
HTQPRRLAARTVAERIAEEMGTQIGDEVGFHVRFTGEVSRNTKLKVMTDGILLAEIQRDR
LLKKYSAIIIDEAHERSLNIDFLLGYLKQIMPRRPELKIIITSATIDPERFAAHFGTPLP
SGEIEPAPIIEVSGRTFPVELRYRPLQAEAELDAENADENSLEEERDPLDAVTDAVKELS
REAPGDILIFFSGEREIRDAAEALRALVASNKRMPRYEVLPLFARLSLAEQHRVFHPGGA
PRIILATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCG
RVSEGIAIRLYSEPDYQARPEFTDPEILRTNLASVILQMISMGVVSSATEVAQFPFVQPP
EARAITDGVNLLRELGALESTKAAKLTDIGRKLAQLPLDVRLGRMIVESADRGVAKELMV
LAAGLSIQDPRERPSEETGQRERAVQMHKRFADEKSDFIALLNLWAYLQEQQKQLSSSAF
RRLCKSEFINYLRVREWQDLFTQLRQLAKPLGITVAAAPIDPAGNEDQVHKSLLAGLLGH
IGLYDERKRDYLGARGTRFAIFPGSGLFKKSPTWVMSAELVETSRLWARVNAAIAPEWVE
EVAPHLLKRTHSEPHWSKRTGSVMGYEKVTLFGLPIIPRRQFHYWRVDPLLARELFIRHA
LVEGDWRTHHKFFAKNQALLEEVEELETRMRRHDLRISDDDLFAFYDARVGAQVYSERHF
DRWWKKARATDPALLDFDPEALLADGGELDETLFPTTWQLGSIHLPLSYEYNPAAAGSEG
DGVSLSVPVVFLNQLDPARFAWLIPGLRHELITALIRSMPKSIRKNFVPAPDVAAKALEM
LNTDFDPSADDLAESLALVLRRLRGMVVDPAVFDFATLPPHLRFGFTITDASGKVLGQGD
DLAALQYKFAAANRTALASGVNSPGAGKPGKPGKPVAAASQRKKPQASAATGAWDQKALE
TWPQLESSGQTLGDTLPAKVTTTVMGQQITAYPGLDDNGSTVDLTVFRSEAERDAAHRSG
VIRLLMLRLPPAAKFVISHLNNAEKLVFTQNPHGSIDKLIADCTMAAVDQLVPESLPMNR
AGFEALFEAVRAEQIDTIFTITAIVAKVFGASTRINKDLKSTKSLAMFAAVTDIRSQLEQ
LIYPGFIAATGAANLMRLPRYVAGVEKRLEKLRAGAVTRDSQALVIIQKLEDEYDNALEK
VPQGARVPALLAQVKWMLEEMRISLFAQELGTAYSVSEKRIRKAMKDGLAQL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcattacgtatcccgaagccctcccggtctcatcccgtcgcgcagacatc
ctcaaggcagtgcgcgagaaccaggtagtagtcattgccggcgaaaccggttcgggcaaa
accacccagctgcccaaaatgctcatcgagctcggcctggccgagcagggcatgatcggg
cacacccagccccggcgcctcgccgcgcgcaccgtcgccgagcgcattgccgaggaaatg
ggcacgcagatcggtgacgaagtcggcttccacgtgcgcttcaccggcgaggtatcgcgc
aataccaagctgaaggtcatgaccgacggcatcctgctggccgaaatccagcgcgaccgc
ctgctgaaaaaatattcggcaatcatcatcgacgaggcccacgagcgcagcctgaatatc
gacttcctgctcggatacctcaagcagatcatgccccggcgccccgagctgaagatcatc
atcacttcggccaccatcgacccggaacgatttgccgcgcacttcgggacgccgctgcca
tcgggcgagattgaaccggccccgatcatcgaggtctccgggcgcaccttcccggtagaa
ctgcgctaccggccactgcaggccgaagccgagctggacgccgagaacgccgacgagaat
tccctggaagaagagcgcgacccgctcgatgcggtcaccgacgcggtcaaggagctgtcc
cgcgaagccccgggcgacatcctgatcttcttctccggggaacgcgaaatccgcgacgcc
gccgaggccctgcgcgccctggtcgcctccaataagcgcatgccgcgctacgaggtgctg
ccgctgttcgcccggctgtcgctggccgagcagcaccgggtcttccacccgggcggcgcc
ccgcgcatcatcctggccaccaacgtggccgaaacctcgctgaccgtgccgggcatcaag
tacgtgatcgataccggcaccgcccgcatctcgcgctactcgcaccgcaccaaggtgcag
cggttgccgatcgagcgtgtttcgcaggccagcgccaaccagcgatcggggcgttgcggc
cgtgtctccgagggcatcgcgatccgcctgtactccgagcccgactaccaggcgcgcccc
gaattcaccgacccggaaatcctgcgcaccaacctggccagcgtgatcctgcagatgatc
tccatgggcgtggtctcctccgccaccgaggtggcccagttcccctttgtgcagccgccc
gaagcccgcgccatcaccgatggcgtgaacctcctgcgcgagctcggcgccctggaatcc
accaaggccgccaagctcaccgatatcgggcgcaagctggcccagttgccgctggatgtg
cgcctgggccgaatgatcgtggagtccgcggatcgcggcgtcgccaaggagctcatggtg
ctggccgccgggctaagcatccaggacccgcgcgagcgccccagcgaggagaccgggcag
cgcgagcgcgcggttcaaatgcacaagcgcttcgccgacgagaagtccgatttcatcgcg
ctgctgaacctgtgggcctacctgcaggaacagcaaaagcagctgtcctcctcggccttc
cgcaggttgtgcaagtccgaattcatcaactacctgcgcgttcgcgaatggcaggatctg
ttcacccagctgcgccaattggccaagccgctgggcattaccgtggcggccgcgccgatc
gatccggcgggcaatgaggaccaggtccacaagtcgctgctggccgggctgctggggcat
atcggcctctacgatgagcgcaagcgcgattacctgggcgcgcgcggcacccgttttgcg
atcttccccggatcggggctgttcaagaagtcccccacctgggtcatgtccgccgagctg
gtggaaacttcgcggctctgggcccgggtgaatgcggccatcgcgcccgaatgggtggaa
gaagtggccccgcatctgctcaagcgcacgcactccgaaccgcactggtccaagcgcacc
ggatcggtgatgggctatgagaaggtcaccctctttggcctgccgatcattccccgccgc
cagttccactactggcgcgttgatcctctcctggcgcgcgagctgttcatccgccacgcg
ctggtcgagggcgattggcggacccaccacaagttcttcgccaagaaccaggcgctgctc
gaagaggtggaagagctcgaaacccgcatgcgccggcatgatttgcggatcagcgacgat
gacctcttcgcgttctacgacgcccgggtcggcgcccaggtttattccgagcggcacttc
gaccgctggtggaagaaggcccgggccaccgatccggcgctgctggactttgatcccgaa
gccctgctggccgacggcggggaactggacgaaacgctgttcccgaccacctggcagctt
ggttccatccacctgccgctgagctacgaatacaaccctgccgccgccggctccgagggc
gacggcgtgtcgctcagcgttccggtggtgttcttgaaccagctggatccggcgcgattc
gcctggctgatccctggcctgcgccacgagctgatcaccgcgctgatccgctccatgccc
aagtcgattcgcaagaacttcgtgcccgccccggatgtggcggccaaggcgcttgaaatg
ctcaacaccgacttcgatccgtccgccgacgatctggccgaatccctggcgctggtattg
cgccggctgcgcggcatggtggtcgacccggcggtcttcgacttcgccacgctgccgccg
cacctgcgctttggcttcaccatcaccgacgcttcgggcaaggtgctcggccagggcgat
gacctggccgccctgcagtacaaattcgccgccgccaaccggaccgccctggccagcggg
gtcaactcccccggtgccgggaaacccggcaagcccggcaagcccgtggctgctgccagc
cagcgcaagaagccccaggcttcggcggccaccggcgcctgggaccagaaggccctggag
acctggccgcagctggagtcctcgggccagaccctgggcgataccctgccggccaaggtg
accaccaccgtgatgggccagcaaatcaccgcctacccggggctggacgataacggcagc
accgtggacttgacggtcttccgcagcgaagccgagcgcgatgccgcccaccgctccggc
gtgatccgattgctgatgctgcgcctgccgccagcggcaaaattcgtgatctcgcacctg
aacaacgcggagaagctggtcttcacgcagaacccgcatggctcgatcgacaaattgatc
gccgactgcaccatggccgcggtcgatcagctggttcccgagtcgctgccgatgaaccgg
gcaggcttcgaggccctctttgaagcggtgcgagccgagcagatcgacaccatcttcacg
atcaccgcgatcgtggccaaggtgttcggcgcctccacccgcatcaacaaggatttgaag
agcaccaagtccctggccatgttcgcggcggtcaccgatatccgttcgcagctggagcag
ctgatttatccggggttcatcgccgccacgggagcggcgaatctgatgcgcctgccgcgc
tatgtggccggcgtcgaaaagcgcctggagaagctgcgcgccggcgctgtcacccgcgac
tcgcaggcgctggtgatcatccagaagctcgaagacgagtacgacaacgcgctggagaag
gtgccgcagggcgcgcgcgtcccggcgctgctggcgcaggtgaagtggatgctggaggaa
atgcgcatctcgctctttgcccaggagctggggacggcctattcggtgagcgaaaagcgc
atccgcaaggcgatgaaggacgggctggcgcagctgtag
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