Gracilinanus agilis (agile gracile opossum): 123231098
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Entry
123231098 CDS
T07702
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04612
Antigen processing and presentation
gas05145
Toxoplasmosis
gas05152
Tuberculosis
gas05164
Influenza A
gas05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
123231098 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
123231098 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
123231098 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
123231098 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
123231098 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gas01001
]
123231098 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gas04054
]
123231098 (CIITA)
Enzymes [BR:
gas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
123231098 (CIITA)
Protein kinases [BR:
gas01001
]
Serine/threonine kinases: Other
TAF1 family
123231098 (CIITA)
Pattern recognition receptors [BR:
gas04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
123231098 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_4
LRR_6
NLRC4_HD2
LRR_14
LRR_8
LRR_9
NB-ARC
Motif
Other DBs
NCBI-GeneID:
123231098
NCBI-ProteinID:
XP_044513261
LinkDB
All DBs
Position
1:178640668..178677395
Genome browser
AA seq
1109 aa
AA seq
DB search
MESGPLSEGSYLGLLQSEVDPLQLFHFYDQSLTGEEEVEFSSDPDTDTINCDQVNRLWNA
IENEGTGEAYDRIAALAEYMFSDPHPETEGIFGNIDPDEVLNENIDALAEVPQKSQKCQK
RLFLDKPEPQSDIWETKRRKPEASPAIPLVTNNLVTASYSDNLVLKDSLSPLPGQVAKPS
LPSMEEAFLVPVSSASPVFACLNFNGGPIQLIPAFPTLPQGVFHFTVENGVSNIFLYPAS
SGDDAIIQSLPVSPDRPGSTSPSVPSAADMPNMPEASALTLQGRKTDVHLEQALEQLTTM
VVDSNLAPRQPESVEWFCRALQKAYGDVPEGQNSHYIDVELTRTQVEKNSKYQEKDLAIQ
DWTERQKACVGWREVFARPSGQKGETQVIAVLGKAGLGKSAWTRAVCRNWAQGQLPQYEF
VFHYKCHGLNLPGNDYCLKDLFFRLCHHSLEESEEVFKYILKHPNHILVILDAFEELEGQ
DGFLHCLASSSPRDPQSIKGLLAGLFQRKLLRGCTLLITTRPKGRFIQYLAKVDSLLEVQ
GFSPEQVESYFEKYFQDSPSDRDEVLRLLRSQPYLLSHCYSPAVCLSLCQLCEKILAAGG
PTQLPSTLTGLFVSLFSLALRAKKKGTSETWPRRCLAGLAELAWERGQRHCNVLREDQFP
SEEVKEFTVSGDFMWPLPTDGDPEMAFSTFLLQNFLGALRLALSGEVRHKELPRYIALTP
RKKKPYDNWLDRVPRFLSGLLFQPLSSCLGPLGGDEQVELVCKRQKVLLSYLTRLQPGTL
GPGRLLELLHCAHEAADSHLWGHVTAGLPSYLSFWGVRLAPPDVHVLGEALKAAGKDFSL
DLRSTSINLHGLRILVQLDCVTCFRASLSDTVWLWESLQQSGQHELLQSSTKKFTIDPFK
VKSMKDVEDLCSLVHIQSSGNVPIEACDPLPAIRDLKKLEFALDTGLGPQDFLELVRILA
AFSSLEHLDLDTLSENKIGDEGVTQLSAIFPELKVLETLNLSQNCITDVGATELAKALPS
LATSLITLSLYNNCICDTGAENIASVLPKMVSLRVLDVQYNKFTVAGAQQLTASLKKCPH
IETLAMWNSTIPYGVQEHLQHLDSRISLR
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgggccactgtcagaaggaagctacttggggctgctccaaagtgaggttgac
cccctacaacttttccatttttacgaccaatccctgactggagaagaagaggttgagttt
tcttcagatcctgatactgacacaatcaactgtgatcaagtgaacaggctatggaatgcc
atagaaaacgagggcacaggagaggcctatgacaggatagctgcactggcagaatacatg
ttttcagatccacatccagagactgaaggtatttttgggaacattgacccagatgaagtg
cttaacgagaatatagatgcattggctgaggtgccacagaaatcacagaaatgtcagaaa
agattgtttctggataagcctgagcctcagtcagacatttgggagaccaaacgcagaaaa
ccagaggcatccccagccattccattggtaaccaacaatttagtgacagcatcttacagt
gacaatttggtcctgaaagactctctgtctcctctcccaggccaagttgccaagcctagc
ctgccctccatggaagaagcctttctggtgcctgtgtcctcagccagtcctgtttttgct
tgcctgaatttcaacgggggacctatccaactcatccctgccttccccactctgccccaa
ggtgtattccatttcacagtggaaaatggagtctccaacatcttcttatacccagcctca
tcaggggatgatgccatcatacagagcctcccagtgtcacctgacaggcctggctccacc
agtccatctgttccatcagcagcagatatgcccaacatgcctgaggcctcagctctaact
ttgcaaggcagaaaaacagatgtacatttagaacaagccctggaacagctcacaacaatg
gtagtagattctaacctagctcccagacagcctgagtctgtggaatggttctgtcgtgct
ctacaaaaggcatatggggatgttccagaaggtcaaaacagccattacattgacgtagaa
ctcacaagaacccaggtggaaaaaaatagcaagtatcaagagaaagacctggcaatccag
gactggacagagagacagaaggcatgcgtgggatggagagaagtctttgcccgccccagt
gggcagaaaggggagacacaggtgattgcagtactaggcaaggctggcttgggcaaaagt
gcctggactcgggcggtctgtaggaactgggcccagggccagcttcctcaatatgaattt
gtcttccactacaaatgccatggcctgaacttgccagggaatgactattgcctgaaagat
ctgttttttagactctgtcatcactcattggaagaaagtgaggaagtcttcaaatatatt
ttgaagcacccaaaccacattctggtcattctggatgcctttgaggaactagaggggcaa
gatggcttcctgcattgcctggccagctcctctcctagagatccccagtccatcaaaggg
ctgctggctggtctcttccaaaggaagctcctaaggggttgcacactgctgatcacaacc
aggccaaagggaaggtttatccagtacttggccaaagtagacagcctcctggaggtgcag
ggcttctctcctgagcaggtagagtcttactttgaaaagtatttccaggattcaccatca
gacagggatgaagtcttgaggctcctccggtcccagccctacctgctcagccattgctac
agccctgctgtgtgcctctccctctgtcagctgtgtgagaaaatcctggctgcgggaggt
ccaacccaacttccctccacactcactggtctctttgtcagcctcttctccttagcactg
agagccaagaaaaaaggaacatcagaaacctggcccaggaggtgcctggcagggttggca
gagttggcatgggagcgaggccagagacactgcaatgtcctgagagaggaccagttcccc
tctgaagaagtgaaggaattcactgtttctggggactttatgtggccattgccaacagat
ggggatccagagatggccttctctacctttctcctgcagaacttcctgggagctctgaga
ctggcactgagtggggaagtaagacacaaggagctccccaggtacatagccctgacccct
aggaagaagaaaccctatgacaactggctggaccgggtaccccgcttcctctctgggctt
ctcttccaacccctatcctcctgccttggtccccttggtggggatgagcaggttgagctt
gtatgcaagaggcagaaggtcctcttgagctatctgacacggttacaacctgggacactg
ggacctgggaggctccttgaactgctgcattgtgcccatgaggcagctgacagccacctc
tgggggcatgtaaccgctgggctaccctcctacctttccttctggggagttcgcctggcc
ccaccagatgtgcatgttttgggagaggccctgaaagcagctggcaaagacttctccctg
gatctcagaagcacctccatcaacctacatgggctacggatcctggtccaacttgactgt
gtcacctgcttcagggcatctctgagtgacacagtgtggctgtgggaatcccttcagcaa
agtgggcaacatgaactactccaaagttccactaagaagttcaccattgatcccttcaaa
gtcaagtccatgaaggatgtggaggacctttgcagcctggtacatatccaaagctcagga
aatgttcctatagaggcatgtgaccctctccctgccatcagagacttgaagaagcttgag
tttgcacttgacacaggattgggtccccaggactttctggaattggttaggattcttgca
gctttttcatcccttgagcatttagacctggacaccctaagtgagaacaagattggggat
gaaggtgtaactcagctctctgccatctttccagaattaaaggtcttggaaaccttgaac
ttgtctcagaattgcatcactgatgtgggagccacagagttggccaaagctctgccatca
ctagcaacatccctcattaccttgagcctgtacaacaactgcatctgtgatactggagcc
gagaacatcgctagtgtgcttcccaaaatggtgtccttgagagtcctggatgttcagtac
aacaagttcacagttgcaggagcccagcagctcacagccagtctgaagaaatgtccacat
attgagacattggcgatgtggaactccactattccttatggggttcaagaacacctacag
catctagactcccgaataagcttgcggtag
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