Gracilinanus agilis (agile gracile opossum): 123231993
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Entry
123231993 CDS
T07702
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123231993 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gas00535
]
123231993 (COL15A1)
Proteoglycans [BR:
gas00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123231993 (COL15A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
123231993
NCBI-ProteinID:
XP_044514258
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All DBs
Position
1:complement(152900141..153118655)
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AA seq
1254 aa
AA seq
DB search
MLSRQNWGSWCLSVLLWPALLSAIILAQITEEQGSKGHLDLTELIGVPLPSSVSFITGYG
GFPAYSFAPGANIGRPTRTLIPETFYTDFAISVTVKPDSNHGGVLFAITDAFQKIIYLGL
RLSQVQDGTQKIILYYTEPGSHVSQEAASFKVPVMTNKWNRFTVIIEGSNVILLIDCEEH
NRIQFMRSSQALRFESSSGIFVGNAGATGLERFTGSIQQLTIQPDPHPSKDQCEDDDPYA
SGETSGFQEAEDIAEIQEAITYTQPPPEETKAEPIEVPPTTLPESKEMELSGDAETEDGP
EAEDSPKAQDTSKTEDSPEITNSSHANSSDSEQGSGDIVHDKQEKDNTTDSDQKAEIGSG
SEELFEISGEKDTTDEENLTETQTPTRYPEKEDENNLPTYGPSQPGPTVQPGKGDILGER
GLPGPKGQAGPKGEKGDPGEGQPGLPGFPGSPGPSGPPGTLGIMEIDGSGFGSGSGSGSG
SGSGSDSDSSSVNIEGSGELLRGTPGPPGPPGEPGLPGEPGSELYIGPPGSPGEDGPSGE
PGPPGPDGHPGLNGAAGLPGMKGEKGEKGPNGSIGEKGDSGKRGLPGPPGKDGVVGEPGP
PGLPGPPGPPGASCGMGLGFEDIEGSGSISLSSEPKTPGPTAPSGSKGEKGEQGPKGERG
NDGEGLIGPPGPPGPPGRTVAVTSSIFNGTDGIENITELPELTGPPGPKGPKGDTGFPGL
PGEKGEKGEPGTIFTGDIPLERLMLKKGEIGIQGPPGPMGPKGPPGHKGELGFPGRPGRP
GLNGLKGAKGERGVVQLGPPGLPGPPGPPGPPGAMINIKGTVFPISPRPHCKTPVATTHP
GNQELITFHGVKGEKGSWGLPGQPGPKGEKGDEGEPGPPGPPFPITYLKHFMDRMKGESG
NKGIKGEKGDSNGAFFMPGPPGLPGSPGQVGQKGDSVIGPRGPPGAPGLPGPPGYGAHGP
PGPPGPPGPPGPPAILGSAVALPGPPGPPGQPGLPGSRNLVTTFGNIESMMQNAHLVIEG
TLIYLSESTEFFIRVRNGWKKLQLGELIPIPADSPPPPAISSNIQQPLPPPIPASNTYYE
KPALHLVALNMPFSGDIRADFQCFQQAQAAGLLSTYRAFLSSHLQDLSTIVRKADSYSLP
IVNLKGEILFYNWESIFSGHGGQFNSQVPIYSFDGRNVMTDPSWPQKVIWHGSNTNGIRL
VSNYCEAWRTADIAVTGNASPLSTGKILDQKTYSCASKLIVLCIENSFMTDIRK
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgctttcaaggcagaactgggggtcctggtgtttgtcggtcctgctctggccggcgctg
ctgtctgctatcatcctcgctcagatcacggaagaacaaggatctaaaggccacctcgat
ctcacggagctaattggagtcccactgccttcatccgtctcctttatcactggctatgga
ggatttccagcttatagttttgcaccaggtgctaacattggccgtccaacaagaacttta
attcctgagacattctacacagattttgcaatcagtgtaactgtaaagcctgatagcaac
catggaggtgtattatttgcaataacagatgcatttcagaaaattatttacctaggactg
aggctctcacaagttcaagatggcacccagaaaataatactgtattatactgagcctggc
tcccatgtttcccaagaggctgcctcatttaaagttccagtaatgactaacaaatggaac
cggtttacagttatcattgaaggaagcaatgtgatactcctcatagattgtgaggaacat
aaccgcattcagtttatgaggtcatcccaagccttgagatttgagtccagctcaggtata
tttgttggaaatgcaggagccacaggactggaaagattcactggctcaatacaacagtta
accatccagccagatccccatccttccaaggaccaatgtgaagatgatgacccatatgca
tctggagagaccagtggctttcaggaagcagaagacattgctgaaatacaagaagccatc
acatatactcaaccccctcccgaagaaacaaaagcagagccaattgaagtacctccaaca
acactacctgaatctaaggaaatggagctctcaggtgatgctgagactgaggatggccct
gaggctgaggatagccctaaagctcaagatacctccaagactgaggatagtcctgagatc
accaactccagtcatgcaaactctagtgactcagagcaaggatctggtgatatagttcat
gacaaacaagaaaaagacaatactactgacagtgaccaaaaagcagagattggttcagga
agtgaagaactctttgaaataagcggagaaaaggatacaacagatgaagaaaatttgaca
gaaacacaaacacctaccagatatcctgaaaaagaagatgaaaacaaccttccaacttat
ggtccaagccaacctgggccaacagtacaacctggaaaaggtgacatcttgggtgaaaga
ggactcccaggaccaaaaggacaggctggccctaaaggggaaaagggtgatcctggtgaa
gggcagccaggtcttcctgggtttccaggttcccctggaccatctgggcctcctggaaca
ttgggtataatggagatcgatggctctggctttggctctggctctggctctggctctggt
tctggttctggttctgattctgattccagctctgttaacattgaaggtagtggagaactt
ctgagaggtactcctggacccccagggccaccaggagaacctggtctcccaggagagcca
ggatctgaattatatataggaccccctggttcacctggagaagatgggccatctggtgaa
ccaggtcctccaggtcctgatggtcatccagggcttaatggcgctgctggtcttccagga
atgaaaggagaaaagggtgaaaaaggtcctaatggctccattggtgaaaagggtgactct
ggaaaaagaggattaccaggccccccagggaaagatggggttgttggggagcctggcccc
cctggcctccctggtcctcctggaccccctggagccagctgtggaatgggacttggattt
gaggatatagaaggctctggaagcattagtttgtcgagtgaacccaaaactccaggacca
acagcaccaagtggttccaaaggagaaaaaggagaacaagggccgaagggtgaaaggggg
aatgatggagaaggtttaataggacctccaggaccaccaggaccaccaggaaggactgtt
gctgtgaccagttcaattttcaatggcactgatggaatcgagaatattactgaacttcct
gaactaactggcccaccgggcccaaaaggaccaaaaggtgacactggatttccagggttg
ccaggagaaaagggtgaaaagggtgaaccaggaaccatttttactggcgatattcccctt
gaaaggttgatgttgaaaaagggtgaaattggaattcagggaccaccaggaccaatgggg
cccaaaggaccacctggacataagggagagttgggtttcccagggcgaccaggaaggccg
ggtctgaatggactaaaaggtgccaaaggagaacgtggagtagtgcaattaggcccacct
ggcttgcctggtccccctgggcctcctggaccaccaggagctatgattaacatcaaaggt
acggttttcccaatttctcccagacctcactgcaaaacaccagttgctactactcatcct
gggaatcaagaacttataacttttcatggtgttaaaggagaaaaaggttcctggggtcta
cctgggcaaccaggcccaaagggtgaaaaaggagatgaaggtgaaccaggtccaccaggt
cccccatttcctattacatacttgaaacactttatggatagaatgaagggtgagtctgga
aacaaagggatcaaaggtgaaaaaggagattccaatggtgcattttttatgcctggacct
cctggactaccgggaagtcctggacaagttggccagaaaggtgattctgtcattggaccc
agaggccccccgggggcaccaggtttgcctggacctcctggctatggagctcatggaccc
ccaggacctcctggacccccagggccaccaggacctccagcaatattgggatcagcagtg
gcacttccaggcccacctggccctccaggccagccaggacttccaggatccaggaacctg
gtaacaacatttggaaatattgagagtatgatgcaaaatgctcatttggtaatagaaggc
acactaatctatttaagtgaaagtactgaattttttatacgtgtgagaaatggatggaaa
aaattgcagcttggagagcttattcccattcctgctgatagtccaccacctcctgcaatt
tccagcaatattcagcaacctctacctccaccaattccagcttcaaacacctattatgag
aaaccagcactccacctagttgctttgaatatgccattttctggagacattcgagcagat
tttcagtgcttccagcaggcccaggctgctggtttattgtccacatatagagctttctta
tcatcccatttgcaagatctgtccacaattgtgagaaaagcagacagctacagcctgcca
atagttaatcttaagggagaaatactattctataattgggagtccattttttctggccat
ggaggtcaattcaatagccaagttccaatatattcctttgatggccggaatgttatgaca
gacccatcatggcctcagaaggtaatatggcatggctccaacacaaatgggattcgactg
gtaagcaactactgtgaagcatggagaacagcagatatagctgtaacaggaaatgcatca
ccactgagcacaggaaaaattttggatcaaaaaacctatagttgtgctagcaaactcatt
gttttatgtatcgaaaacagctttatgaccgatataagaaaatga
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