Gracilinanus agilis (agile gracile opossum): 123233330
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Entry
123233330 CDS
T07702
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas01524
Platinum drug resistance
gas03430
Mismatch repair
gas05200
Pathways in cancer
gas05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123233330 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
123233330 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
123233330 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
123233330 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gas03400
]
123233330 (MSH6)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123233330 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
123233330
NCBI-ProteinID:
XP_044515404
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Position
2:96562933..96587742
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AA seq
1339 aa
AA seq
DB search
MTLQVAGGAAEDRDTKAGDNKGMWPMVICEDTHEDKEDKRHNSKMQTRFQGKIMQHWSEF
YRSCRYFKNGLEDSSCDFSPGDLVWAKMEGYPWWPCLVYNHPTEGTFIRERGKTFRVHVQ
FFDDNPVRGWVNKRLVKPYTGSKCKEAQKGGPFYTAKPEILRAMQLADDAISIEKSKRLE
LAVCDEPSDPDEEEMEVAVASASDNSGEDIESEEEVRPKRHLAKRSTARNKKRRVVSDSE
SDIGGSDVEFKPDTKEEGSSDEASSGMGESDSDMDSPVKAPKRRRGNSSLKKKSLGAYTP
NVSKRVVGVSSETKITLSAFSAPQNFESQAHVSGGGDGSPGSTQWYHETLEWLKEGKRKD
ACRRRPDHSDYDPNTVHVPEDFLNTCTPGMRRWWQIKSQNFDLVIFYKVGKFYELYHMDA
IIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKLS
HISRFDRVVRREICRIITKGTQTYSVLDGEPSESNNKYLLCVKEKEEEASGHTRLYGVCF
IDTSVGKFYLGQFSDDRHCSRFRTLVAHYTPAQILFEKGNLSAETKKVLKGSLSSSIQEG
LTPGSQFWDAAKTLKTLLEEGYFKEKLNVAELPPVLKSMTSESDTIGLTPNDKSELALSA
LGGCVFYLKKCLIDYELLSMANFEEYIPVDADMVKAVKSGAAFAKRDRRMVLDAVTLSNL
EILQNAVSGSTEGTLLERIDSCCTPFGKRLLKHWLCAPLCNPSSINDRLDAMEDLMAVPE
KTSEVVDLLKKLPDLERLLNKIHSVGSPLKSQKHPDSRAIMYEETTYSKKKIVDFLSALE
GFKVMCKIIGIMEEVVDNFKSKILKQIITLQTQNSEGRFPDLTTELNRWDTAFDHEKARK
TGIITPKTGFDSDYDHALADIKDNEQSLLDYLEKQRKRIGCRSIVYWGVGKNRYQLEIPE
SFTLHDLPEEYELKSTKKGCKRYWTKDIEKKLADLMNAEERRDVSLKDCMRRIFFNFDKN
YRDWLTAVECIAVFDVLLCLSNYSRGDAHMCRPAILVPDEDTRPFLKLKGARHPCITNNF
FGDDFIPNDIMIGCKKEDSEDGNWDAYCVLVTGPNMGGKSTLMRQAGLLVIMAQMGCYVP
AEVCNFTPVDRVFTRLGASDRIMSGESTFFVEMNETASILQHATEHSLVLMDELGRGTAT
FDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVCLGHMACMVENECEDPSQE
TITFLYKFINGACPKSYGFNAARLACLPEEIIQKGHRKAREFEKMTQSLRLFREVCLALE
NSAADVQAIHKLLTLIKEF
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcaagttgctggaggtgctgctgaggacagggacaccaaggctggagacaac
aaaggcatgtggccaatggtcatctgtgaagatacccatgaagataaagaagacaaaaga
cacaatagcaaaatgcaaaccagatttcagggaaaaattatgcaacattggtcagagttt
tatagatcttgtcgttatttcaagaatggcctggaggacagctcttgtgacttctctcct
ggtgatttggtttgggccaagatggaaggttacccctggtggccttgccttgtgtataac
caccccactgaaggaacattcatcagagaaagggggaaaactttccgagtccatgtacag
ttttttgatgacaatccagtgaggggctgggttaataaaaggcttgtaaagccatataca
ggttcaaaatgtaaggaagcccagaaaggaggtcctttttatactgcaaaacctgaaata
ctcagggcaatgcaactggcagatgatgctataagtatagagaagagtaagcggcttgaa
ctagcagtatgtgacgagccttcagatccagatgaggaagagatggaggtggctgtagct
tctgcatctgataacagtggagaggatatagaaagtgaagaggaagtgagacccaagagg
catctggctaaacgtagcacagctcggaacaaaaaacggagagttgtttcagactccgag
agtgacattggtggctccgatgtggaatttaaaccagataccaaggaggaagggagcagt
gatgaagcaagcagtgggatgggtgaaagtgatagtgatatggacagccctgtcaaagct
cccaaacggaggagggggaacagctctctcaagaagaaaagcttgggagcttacactcct
aatgtatccaaacgagtagtaggagtttcctcagagacgaagatcacattgagtgctttc
tctgctccacagaactttgagtcccaagcccatgttagtggaggtggtgatgggagcccc
ggctctactcagtggtaccatgaaacactggagtggctgaaggagggaaagaggaaagat
gcatgcaggaggcggcccgatcattctgactatgacccgaacactgtccacgtccctgag
gatttccttaacacttgcactccaggaatgagaaggtggtggcaaatcaagtctcagaac
tttgacctagtcatcttctataaagtggggaagttctatgagctataccacatggatgca
atcattggggtcaatgagctagggctagtgtttatgaaaggcaattgggcccattcaggt
ttcccagaaattgcatttggtagatattcagattccttagttcagaagggttacaaagtt
gctcgagttgagcaaacagaaacccctgagatgatggaagctcgttgccgaaagctgtct
cacatatccagattcgacagggtggtgcggagagagatctgcagaattattaccaagggg
acacagacttacagtgtgctggacggtgaaccttctgagagcaacaataagtacctgctc
tgtgtcaaggaaaaagaggaggaagcttctggccacactcgtttgtatggtgtttgcttt
attgacacctctgtgggcaagttttacttgggtcaattttcagatgaccgtcattgctcc
cgatttaggactctggtggcacattacactcctgctcaaatattgtttgagaaaggaaat
ctctctgctgaaacaaagaaggtcctaaaggggtctttatcttcttccattcaggaaggt
ctgacaccaggctcccaattttgggatgcagccaaaaccttgaaaacactccttgaagaa
ggatactttaaagaaaagctaaatgtggctgaattaccccctgtgcttaagagcatgaca
tcagagtctgacaccattggtttaacacctaatgacaagagtgagctggcactgtctgct
ttgggtggttgtgtcttctacctcaaaaaatgccttatagattatgagcttttgtcgatg
gccaactttgaagaatacattcctgttgatgctgatatggtgaaagctgtgaagtctggt
gctgcctttgctaagagagatcgtcgaatggtgttagatgctgttacgctgagcaatctg
gagattctccagaatgcagtaagtggctccactgaaggtacactgttggagaggattgat
tcttgttgtactccctttgggaagcggcttctaaaacactggctctgtgcaccactttgt
aacccatcttcaatcaatgaccgtttagatgcgatggaagatctcatggctgtgcctgag
aaaactagtgaagtagttgaccttctgaagaagcttccagaccttgagaggctgttgaac
aagattcatagtgttggttcgccactaaagagtcagaagcacccggacagcagagctata
atgtatgaagaaacgacttacagcaaaaaaaagattgttgatttcttatccgctctagaa
ggattcaaagtgatgtgcaaaattattgggattatggaagaagtggtggataatttcaag
tctaaaatccttaagcaaataattacacttcagacccaaaattcagaaggtcgtttccct
gatttgaccacagaactgaaccgatgggatacagcttttgaccatgaaaaagctcgaaag
actggaataattactcccaaaacgggatttgattctgattatgaccatgccttggctgac
atcaaagacaatgagcagagcctcttagattatttggagaaacagcgtaaacggattggt
tgtagatccatagtttactggggtgttggcaaaaatcgttatcagttggaaattccagaa
agtttcacattgcatgatttgccagaggaatatgaactaaagtccaccaaaaagggttgt
aaacgatactggaccaaggacattgagaagaaacttgctgatctgatgaatgctgaagag
cggagagatgtatcactgaaggactgtatgaggaggatcttcttcaattttgataaaaat
tatagggactggctgactgctgtggagtgcattgctgtgtttgatgttttattatgcttg
tccaactatagtcgaggtgatgctcatatgtgccgtccagcaatcctggtaccagatgag
gatactcggcccttcttaaagcttaaaggagctcgacatccatgcattacaaataatttt
tttggtgatgactttattcctaatgacattatgataggctgtaaaaaagaagattcagaa
gatggtaactgggatgcttattgtgtgctggttactggaccaaatatgggaggcaagtcc
actctcatgagacaggctggtcttttggttataatggctcagatgggctgttatgttcct
gctgaagtttgtaatttcacaccagttgatagagtgttcaccagattaggtgcttcagac
agaataatgtcaggtgaaagtaccttttttgttgaaatgaatgagactgccagcatacta
cagcatgcaacagaacattccctggtgctcatggatgaactaggtagaggcactgcaact
tttgatggcacagctatagcaaatgcagttgttaaagaacttgccgagaccataaaatgt
cgtactttattttctactcactatcattcgttagtagaggattactcccaaaacgttgct
gtgtgcctgggacacatggcatgcatggttgaaaatgaatgtgaagatccaagtcaggaa
accattaccttcctttataaatttattaatggtgcttgtcctaaaagctatggattcaat
gcggcgaggcttgcttgtcttcctgaagagattattcaaaaaggtcataggaaagcaaga
gaatttgagaagatgacccagtcattgagactatttcgagaagtttgccttgctcttgaa
aattcagctgcagatgtccaggctattcacaagttgttgactttgatcaaggaattttga
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