Gracilinanus agilis (agile gracile opossum): 123234245
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Entry
123234245 CDS
T07702
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04382
Cornified envelope formation
gas04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123234245 (COL17A1)
09158 Development and regeneration
04382 Cornified envelope formation
123234245 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
123234245
NCBI-ProteinID:
XP_044516107
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Position
2:complement(614823409..614878852)
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AA seq
1338 aa
AA seq
DB search
MDGTKKGRREGSEVTERVITETVTTRLTSLPPKGGTSNGYAKTSSLTGGSRLEKQSLTHG
SSGYINSSGSLRGNASTSSYRRAQSPASTLPNSPGSTFERKSHVTRHATYEGSSSGNSSP
EYPRKEFGSSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASASPTRNS
SNTLPIPKKATVETKMVTESSQSGGLKVASMKDKATYAEIQGDDRGVGGAGGGGGGGGGG
AGFGAAPAWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVRKLRARVDSLEQIN
TSMLQDREIYKDRAIAVSHVGGGTSELDSHSQEALWLFVKNKLLIEQEKGNLRGNPGPKG
DMGIQGPKGERGLIGVPGVPGTMGHPGPEGPKGQKGSVGESGPEGPMGQRGREGPTGPRG
EPGPPGFGEKGDRGAAGDPGPQGPPGVPGSVGPKGSIGSPGPQGPSGPSGLQGFRGEAGS
PGPKGEKGPMGPPGPKGDPGEKGPRGLTGEPGLRGLPGPTGEPGAKGAIGPAGPDGHQGP
RGEQGLTGMPGIRGPPGPAGEGGKPGLTGPQGPPGLPGTPGRPGVKGETGTPGRIVTSEG
TSTVTVPGPPGPPGAMGPPGPPGIPGPAGPAGLPGQQGPRGERGIAGESIIGSSSSSGIN
SAPHTAQLQGPPGPPGPPGPPGASITGPPGPRGPAGEGLPGPPGPPGSFLTNSETFFSGP
PGPPGPPGPKGDQGSPGPRGYQGDPGLPGLSVSGSDTLGVTLRGPPGPPGDQGLPGPKGD
KGDPGVPGAPGIPGSPTRGGSSSSRGPPGPPGPPGPPGSISNSRREIQQYISDYMQSDSI
RSHLSGVQGPPGPPGPPGPVTTIGGETFDYTELASRVMSYLRTSGYNVGSFSSISSEDIL
LVLQREEVRQYLRQYLMGPRGPPGPPGASGDGSLLSLDYEELTSRILSYMRSSGISVGSP
GPPGPPGLPGTSYQDLLSLLQGKIRPGMQNHSDIGWRMAPLNHGSLFFLFILGSEFSGLI
GPPGPPGPPGPSGSSWSSLSMEELSSYLQSAGFSSVSGPPGPPGPPGPRGPPGVSAALAT
YAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDGRLREADGSYSRGSSNSYS
SSTSRSTSYSSSLGLGGANGGASLGGGEAYGAALGDGGPYGTDVGTGGGYGTAAGDGGAY
GTEGRVFGAGFTADLDYSELAARVSETMHRQGLLQGMAYTVQGPPGQPGPQGPPGISKVF
ATYGNVTEDLMDFFRTYGAIPGPKGDTGFPGPRGERGPAGNPGRPGPPGPRGHKGDKGDK
GEQVYVGRRRRRSIAVKP
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggatggtaccaagaaaggcaggagagaaggctctgaagtcacagaaagagttatcact
gaaacagtaaccacaagacttacatccttaccaccaaaaggagggacgagtaacggatat
gctaaaacatcatctctcactggagggagccggctggagaagcagagtttaacccatggc
agcagtggctacataaactccagtggaagtttaagaggaaatgcctccacctccagttat
aggagggcccagtctcctgcttctactctccccaattcaccaggctcaacctttgaaagg
aaaagtcatgtcacccgtcatgcaacatatgaagggagctcaagtgggaattcttctcca
gaataccctcggaaggaatttgggtcttcctccaccagaggacggagccagactcgagag
agtgaaattcgtgttcgtctgcagagtgcttccccatctacccgatggacagaattagac
gatgtgaaacgtttgctcaaggggagcagatcagccagtgcgagtcctacccggaactct
tccaacacgctccccatccccaagaaggctactgtggaaaccaagatggtgacagagagt
tctcaatcaggaggtctgaaggtcgcatccatgaaggacaaagccacctatgcagaaata
caaggagatgaccgtggtgtcggtggtgcaggaggaggaggaggtggcggcggcggtggt
gcaggttttggggctgcccccgcctggtgtccctgtggttcctgctgtagttggtggaag
tggcttttaggtctactcctggcctggctgttgcttcttggattgcttttcggactcatt
gctttggcggaggaggtgaggaagctgagagctcgtgtggatagcctggagcaaatcaac
actagtatgttacaggatagagagatctacaaagatcgagccattgctgtctcccatgtt
ggcggagggaccagtgaacttgacagccacagtcaggaggctctctggttatttgtgaaa
aacaagctgctgatagaacaggaaaagggaaatctccgaggaaatcctggaccaaaaggt
gatatgggaattcaaggtccaaaaggagaacgagggcttattggagttccaggtgtccca
gggactatgggccatccaggcccagaaggaccaaagggacagaaaggcagtgtgggagaa
tctggcccagagggacccatgggtcagagaggacgagaaggccccacagggcctcgtggc
gaaccaggaccccctggatttggagagaagggagatagaggtgctgctggagatccaggt
cctcaagggccccctggtgtccctggttctgttggtcccaaaggttctattggttcccca
ggaccccagggcccctcaggtccttctggcctccaaggcttcagaggcgaagctggttcc
cctggtcccaaaggcgagaaaggaccaatgggacccccaggacccaaaggtgatccgggt
gagaaaggacctcgaggtcttacaggagaacctggattaagaggtcttcctggtccaact
ggtgaacctggtgctaaaggagcaattggtccagctggtccagatggacatcaaggtcca
agaggtgaacaaggtcttacaggaatgcctggaattcgtggcccaccaggacctgcagga
gaaggaggaaaaccaggcctcacaggaccccaaggacctccaggacttcctgggacccca
ggccgaccaggggttaaaggtgagactggaactccaggcaggattgtaacttcagaggga
acatcaacagtgactgtaccaggacctccaggaccaccaggagccatggggcccccagga
ccaccaggcattccaggacctgctggcccagctggtcttccaggacagcaaggtccccga
ggggagagaggcattgcaggggaatctattattggaagcagctcttcttcagggatcaat
tctgctcctcacactgctcaattgcaaggcccccctggaccaccaggaccaccaggacca
ccaggagcttcaatcacaggccctccaggaccccgaggcccagcaggggaaggcctacca
ggacctcctggaccacctggaagtttccttacaaactcagaaacattcttctctggtccc
cctggcccacctgggcctcctggccccaaaggagatcaaggctctcctggaccccgagga
taccaaggagaccctggcctcccaggactctctgtctcaggttcagacactctgggagtc
accctacgaggtccacctggccctcctggtgatcagggtcttccaggacccaaaggtgac
aaaggtgaccctggtgtccctggtgctcctggaatccctgggagccccactcgaggagga
tcatcaagttctcgaggacccccaggaccacctggccctcctggtcctcctggttccatc
agcaactctagacgggagattcaacaatacatctctgattacatgcagagtgacagcatc
agaagtcacctctctggagttcagggtcctcctggccctccagggcctccaggacctgtc
accaccattggtggggagactttcgactacactgagttggcgagccgagtcatgagctac
ctacggacttctgggtacaatgtgggctccttttcctcgatttcttctgaagacatccta
cttgttctgcaaagggaagaagtgcgccaatatctccggcaatatctgatgggtcctcga
ggaccccctgggccaccaggagccagcggggatgggtcccttctgtctctagactatgaa
gagttgaccagccgcatcctaagctacatgagaagttctgggatcagtgttggttcccct
ggtcccccgggtcccccgggtctgccaggaacatcctaccaggacctgttgtctttgctc
caaggtaagattagacctggaatgcagaatcattctgacataggatggagaatggcaccc
ctaaatcatggctccttattcttccttttcattctagggtctgaatttagtggtctcatt
gggccccctggaccccctggacctccaggaccttcaggcagctcctggtctagtctcagt
atggaggaactttcatcttaccttcaaagtgcaggcttctcttcggtctcgggtcctccc
ggtcccccgggtcctccaggcccccgtggcccccccggggtttcggcagctttggcaacc
tatgcagctgaaaacagcgatagtttccggagtgagctgattagctaccttacaagtcct
gatgtccgaagcttcatcgtgggacctccgggacctccggggcctcagggtccgccggga
gatggccggctaagggaagctgacggctcctacagccggggaagcagtaactcctacagc
tcttctactagccgcagtacctcctacagctcctccctgggattaggaggagccaacgga
ggagcgtccctgggtggaggggaagcctatggcgcagccctgggagatggtggcccctat
ggcacagacgttggcactggtggcggctacgggacggcagctggagacgggggcgcgtat
ggcactgagggcagagtttttggtgcaggcttcactgcggacctggattacagcgaactg
gctgcgcgagtgtcggagactatgcatcgtcagggtctgctccaaggtatggcttatact
gtacaaggccccccaggccagcctgggccccagggtcctcctggtatcagcaaggtattc
gcaacctacggcaatgtgaccgaggacctcatggacttcttccgaacttatggggcaatt
ccaggaccaaagggagacacaggctttccaggacccagaggtgaaaggggaccagctggg
aatcctggtagacctggacctccaggccccagaggacacaaaggagataaaggagacaaa
ggtgaacaagtctatgttggcaggaggaggaggagaagcattgctgtaaaaccatga
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