Gracilinanus agilis (agile gracile opossum): 123234635
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Entry
123234635 CDS
T07702
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123234635 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123234635 (EDC4)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123234635 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
123234635 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
123234635
NCBI-ProteinID:
XP_044516509
LinkDB
All DBs
Position
2:complement(61804465..61823286)
Genome browser
AA seq
1393 aa
AA seq
DB search
MASSCTSIDIEDATQHLRDILKLDRPPGGSGTESQRTSSSYNGDLNGLLVPDPLSSGDGT
VLAKPSHRLAPLASLEEKQVICLSGDDSSTCIGISAKEVEIVASSDSNISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRGASNGSAMVRVISVSTAERTLLKGFTGSV
ADLAFAHLNSPQLACLDESGSLFVWRLAMENNKIQEEIVVNIKRSEGTPLNHFRRIIWCP
YIPEENEESSEEGSQTLALLHEDRAEVWDLDILRANNSSWPVDVSHVKEGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFCPDIFSSVSVPPSLKACLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEEGDSLSTEGSHGAGTVESAAGVLIKLFCVHTKALQDVQIRFQPQQSPDVVAPLPSHS
SREDFGFGEHLPELNSESLASGQGSGQGSQPDLRRIADLPVPSDFLSLTNEAKPKLMTPD
AFMTPSASLQQITVSPGSSGSSLTTVTALNTTSGTDTTMPRPPEELTLSPKLQLDSSLTL
SSSSSSLQASPRGHSVLIPGLSDKLATKGPSQVPQGNPSLSLELQEVEPLVVPQASPTRA
RSPDVISSASTALSQDIPEIASEALSRGFGTTAPEGLEPDSMASAASALHLLSPRPRPGP
EHGPQHSLDGSTGEGERRSTPSLLETALSQETGASDSKAWPAAPDITRETRNSLADSPRD
DVQEKHKGSSYHRHAYHLLQQDSQDASAEQSDHDDEVASLASTSGGFVAKATAPRLPVKD
WKTKGSPRASPKLKRKGKKDDGDLSQGPRLVEHQAAEPPEEWLAVVRGQQRELAELRQSH
AELLQRLTDQLDSVQSSIMGHVERVLESRQEHEQRRLERALAEGQQRSGQLQEHLSQQLS
QALSSAVAGRLERTVREEMKKTVPQCVSKSLEPVTNQLSGTVAAKLTAVEGTLKENVTKL
VKSKNLTDTIARATTDTLQGPMQAAYREAFQSIVLPTFEKSCQAMFQQINDSFKLGTQEY
LQQLENHMKSRKAREQEAREPVLAQLRGLVGTLQSATEQMAATVSSSVRAEVQHQLHIAV
SNMQESILSQVQRIIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPAAHLDCQAQQAHI
LQMLQQGHLNQAFQQALTAADLNLVLFVCETVDPQQVFGQPPCPLSQPVLLSLIQQLSSD
LGTRTELKFSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLCKAARRL
TIMLQGLAVPGLN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtcctgcaccagtatcgacatcgaggacgccacgcagcatctgcgggacatc
ttaaagctggaccgtccgcctggaggctcaggcacagagagccagcgaacatccagctcc
tataatggagatctgaatggacttctggtgccagaccccctttcttctggtgatggaact
gtgctggccaagccgagtcacaggctagcacccttggccagcctggaagagaagcaggtc
atctgcctttctggagatgacagctcaacttgcattgggatttcagcaaaagaggtggaa
atagtggctagcagtgactctaacatctcaagcaaggctcgagggagcaacaaggtaaaa
atccagccagtggccaaatatgactgggaacagaaatactattacggcaacctgatcgct
gtgtctaattccttcttggcatatgccatccgaggtgccagcaatggctcagccatggtg
cgggtgatcagtgtcagcacagcagaacgcacactgctgaagggcttcacaggaagcgtg
gccgacttagccttcgctcacctcaactccccccagttggcctgcctggatgaatctggc
agcctttttgtgtggcgcctggccatggagaacaacaagattcaagaggagattgtggtg
aacattaaacgttcagagggcacaccattgaatcacttccgaaggatcatctggtgtcca
tatatcccagaggagaatgaggaaagcagtgaggagggcagccagactctggccctgctg
catgaggacagggctgaggtgtgggacctggacattctccgagccaacaatagctcctgg
cctgtggatgtcagccatgtcaaagaaggcttcatagtggttaagggccatagcacgtgc
ctgagtgaaggagctctctctcctgatgggactgttctagccactgcaagtcacgatggc
tttgtcaagttctggcagatctatatagagggccaagatgagccaaggtgtctccatgaa
tggaagcctcatgatggcaggcccctctcctgccttctgttctgtgacaaccacaagaaa
caagaccctgaagtccccttctggaggttcctcatcacaggagctgaccaaaaccgggaa
ctaaagatgtggtgtacagtatcatggacctgtttgcagaccattcgcttttgtccagat
atatttagttcagtgagtgtgcctcccagcctcaaggcctgtctggacctttcagctgaa
taccttatcctcagtgatgtgcagagaaaggtgctgtatgtgatggaactgctgcaaaac
caggaagaaggcagggcttactttagttccatttccgagttcctgcttacccaccctgtg
ctgagctttggaattcaggtcgtgagccgctgccggcttcggcacacggaggttctccca
gctgaggaggaaggggacagcttgagcacagagggctcccatggtgctggcacagtcgag
tcggcagcgggtgttcttatcaagctcttctgtgtccacaccaaggccctgcaggatgtt
cagattcgcttccagccccagcagagccctgatgtggtggccccactcccttcccattca
tcccgggaagattttggatttggcgagcacctgccagagttgaactcagaaagtctggcc
tctggccagggttctggccagggctctcagcctgaccttcgacgaatagctgacctgcct
gtcccttccgactttctcagcttgactaatgaggccaagcccaagctcatgactcctgat
gccttcatgactccaagcgcctctctgcaacagatcacagtgtccccagggagcagtggg
agctctttaacaactgtgacagctttgaataccacctcaggcacagatacaaccatgccc
aggccacctgaggagctgaccctgagtcccaagctgcagctagacagcagtctgaccctg
agcagcagcagtagcagccttcaggctagtccccgcggtcacagcgtcctcatcccaggc
ctctctgataaactagctactaaggggcccagccaggtcccacaagggaacccatcactg
tccctggagctgcaggaggtagagcccctggtggtgccacaggcctctccgacccgggcc
cgctcccccgacgtcatctcctcagcctccacagccctatcccaggacatccctgagatt
gcctcagaggctctatcccgaggctttggcaccactgctcctgagggccttgagcctgac
agcatggcatctgctgcctcggccctccacctgctatccccccggccccggcctggccct
gagcatggcccccagcacagtctggatgggagtactggggagggggagaggcggagtaca
ccttccctactggagacggcgctgagccaggagactggtgcttctgacagtaaggcctgg
cctgctgcacctgatatcacccgggaaacccgcaacagcctggctgacagtcccagggat
gatgttcaggagaaacacaagggctcttcctaccaccggcacgcctaccatctgctacaa
caggatagtcaggatgccagcgctgagcagagtgaccatgatgatgaggtggccagcttg
gcctcaacctcagggggcttcgttgccaaagcaacggccccacgactgccagtgaaggac
tggaaaaccaaggggtctcccagggcctcacccaagctgaagagaaagggcaagaaggat
gatggagacttgtcccagggtccccgactggtagaacaccaggcagcagaaccccctgaa
gaatggctggctgtggttcgaggacagcagcgggagcttgccgagctccgacagagtcat
gcagagctactacagcggctaacagaccagctggactcagtgcagagctcaatcatgggc
catgtggagagagttctggagtctcgacaagaacatgagcagagacggttagagcgggcc
ctggctgaggggcagcagcgtagtgggcagctgcaggaacacttgtcacagcagttgtcc
caggccttgtcctcagctgtagcaggccgactggagcgcacagttagagaagagatgaag
aaaacggttccccagtgtgtttccaaaagcttggagccagtgacaaaccagctgagtggt
actgtggcagccaaattgacagcagtggaaggcaccctaaaggagaatgtcaccaagctg
gtcaagtccaagaacctgaccgacacgattgcccgtgccactacagatacgcttcaaggg
cctatgcaggctgcctaccgagaggccttccagagcattgtgctgcccacttttgagaag
agctgccaggccatgttccagcagatcaatgacagcttcaagcttggtacccaggaatac
ctgcagcagttagagaaccacatgaagagtcggaaggcgagagaacaggaagcacgagag
ccggtgctagctcagcttcgaggactggtgggcaccttgcagagtgccacagaacagatg
gcagccactgtgagcagcagcgtgcgggctgaggtccagcaccaactccacattgctgtg
agcaacatgcaggagtcaatcctgtcccaggtgcagcgcatcataaagggggaagtaagt
ctggccatgaaggagcaacaggcagcagttacttctagcatcatgcaggccatgcgttct
gctgctggcacacccatcccagctgcccacctcgactgccaggcccagcaggcacatatc
ttgcagatgttgcagcagggccacctcaaccaggctttccaacaggccctgacagcagct
gacctaaacctggtgctctttgtatgtgagactgtggacccccagcaggtgtttggccag
ccaccttgtcctctgtcccagcctgtcctgctctccctcatccagcagctctcctctgac
ctgggaacccgcacggaactcaaattcagctacttggaggaagccgtaatgcacctggac
cacagtgaccctatcaccagggaccacatgggctcagtcatggcccaggtgcggcagaag
ttattccagttcttacaggctgagccccacaactctctctgcaaggctgccaggcgtctc
accatcatgttgcagggcctggctgtccctggtctcaactag
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integrated database retrieval system
