Gracilinanus agilis (agile gracile opossum): 123235040
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Entry
123235040 CDS
T07702
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03015
mRNA surveillance pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123235040 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
123235040 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123235040 (PABPC1L)
03041 Spliceosome [BR:
gas03041
]
123235040 (PABPC1L)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123235040 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
123235040 (PABPC1L)
Spliceosome [BR:
gas03041
]
Complex C
Other components
Complex C specific factors
123235040 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_Nup35
RBD_DEAH11
RRM_7
RRM_occluded
DUF6262
Motif
Other DBs
NCBI-GeneID:
123235040
NCBI-ProteinID:
XP_044517009
LinkDB
All DBs
Position
2:complement(239890857..239920687)
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AA seq
605 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFS
TFGNILSCKVVCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQERE
AELGARALEFTNIYVKNFEGDVDDEYLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEK
HEEAQKAVSHMNGKELRGRVLYVGRAQKRSERQSELKRRFEQLKQERVNRYQGVNLYVKN
LDDVIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTSQYMQRLSTLRGLNGPLFPQPTNYFLPAIPQVTAIFQPPAR
ATFYSPGTVAPVRPAPRWTSYSPRSSSTPRRSISNISTVRQASTQVPRAGPHTQRVANIG
TQTMGTGCPGSPGRAVTQYKYSSAVRNTHQVMEPAVHIQGQEPLTASMLASAPAQEQKQM
LGDRLYPLIYGIHAQLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAIAALQAQEVME
LPKAY
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccccggctaccctctcgcgtccctctatgtgggcgacctgcacccc
gacgtgacggaggccatgctgtacgagaagttctcggccgccgggcccatcatgtccatc
cgcgtctgccgcgacgtggccacgcgccgctctctgggctatgcctacatcaacttccag
cagcctgcagacgctgaacgggctctggacaccatgaactttgaggtgatcaaaggtagg
cccatccgtatcatgtggtcgcagcgggaccccgggctccggaaatctggcattggcaac
atcttcatcaagaacctggatgactccattgacaacaaggccttgtacgacaccttctcc
acctttgggaacatcctctcttgcaaggtggtatgtgatgagaatggctcccggggattt
ggctttgtccactttgagactcacgaggctgcaaaccaagccatcaacaccatgaatgga
atgctgcttaatgaccggaaagtcttcgtgggccacttcaagtctcggcaggaacgggag
gcagagctgggggcgcgagcgctggagttcaccaacatctacgtcaagaacttcgaggga
gacgtggatgatgagtacctgcaggagctcttctcccagttcggaaagactctgagtgtg
aaggtgatggtcgatgagaatggccagtcccgaggctttggctttgtcaactttgagaag
cacgaggaagcccagaaggctgtgagtcacatgaatgggaaagagctcaggggtcgggtt
ctgtacgttggacgggcgcagaagaggtcagagaggcagagtgagctgaagcggagattt
gagcagctgaagcaggagagagtgaaccgctaccagggcgtgaacctctatgtgaagaac
ctggatgatgtcattgatgatgagaagctgcggaaggaattctcgccctatggcgtcatc
accagtgccaaagtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctccccagaagaggctacgaaggccgtgacagagatgaatgggcgaattgtcagcacc
aagcccctttacgtggccctggcccaacgcaaggaagagcggaaggccatcctcaccagc
cagtacatgcagcgcctctccaccctccggggcttaaatggccccctctttccccaaccc
accaattatttcctgcctgccattccccaggtgactgcgatcttccagcctcctgcccgg
gcgaccttctacagtcctggcaccgtggcccctgtgcggccggccccccggtggaccagc
tattctccgaggtcttcatccacccccaggcgctccatctccaatatcagtaccgtccgg
caggcctctactcaggtgccccgggcagggccccacacacagagagtggccaatatcggg
acccagactatgggaactggatgtccaggctccccaggccgagctgtcactcaatacaag
tattcctcagctgtacgtaatacacatcaggtcatggagccagcagtgcatatccaaggg
caggagcccttaactgcatccatgttggcctcagccccagcgcaggaacagaagcagatg
cttggtgacagactgtacccactcatctatgggatacatgcacagttggctggcaagatc
accggcatgctgctggagatcgacaactctgagctgctgctgctgctcgagtctccagag
tctcttcactccaagattgaagaagccattgctgcccttcaagcacaagaggtcatggag
ctgcccaaggcatattga
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